Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Whole genome sequencing

ABSTRACT: Whole genome sequencing of rice wild relatives.

PROVIDER: PRJEB85976 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR14709951_1.fastq.gz	Fastqsanger.gz
	ERR14709951_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 2 of 2

Similar Datasets

Whole-genome bisulfite sequencing of wild-type and thick aleurone 2-1 (ta2-1) mutant in rice

Project description:Using whole genome bisulfite sequencing to provide single-base resolution of DNA methylation status in the endosperm of wild-type (ZH11) and ta2-1 rice plants, and identify hypermethylated regions in ta2-1.

2018-11-14 | GSE117187 | GEO

Genome-wide mapping of OsHOX24-binding sites in rice

Project description:In this study, we provide a global overview of genome-wide OsHOX24 binding sites in rice under control and desiccation stress conditions in wild-type and OsHOx24 overexpressing rice plants (H49 line) via chromatin immunoprecipitation sequencing (ChIP-sequencing) approach. We identified numerous downstream targets of OsHOX24 under desiccation stress and control by analyzing the comprehensive binding site map of OsHOX24 at whole genome level in rice.

2021-04-04 | GSE144419 | GEO

Whole genome bisulfite sequencing of sstr2 knockout mice

Project description:GC-specific methylation profiling in Sstr2 knockout and wild type mice using Whole genome bisulfite sequencing

2023-01-17 | GSE165022 | GEO

Whole genome sequencing

Project description:Whole genome sequencing

2019-05-31 | OEX00000033 | NODE

Whole genome sequencing

Project description:Whole genome sequencing

2019-12-02 | OEX00001931 | NODE

Whole genome sequencing analysis of evolved E.coli

Project description:We created a mutator protein. The mutator, was prepared by fusing a PmCDA1 (Petromyzon marinus Cytidine DeAminase) and E.coli RNA polymerase alpha subunit(EcoRNAP alpha). After 120 cycles, whole genome sequencing was performed on the wild type and evolved sample. After characterization of the mutation capacity of our mutator, we evolved a sucrose utilization strain and we sequenced Suc strain.

2021-05-03 | E-MTAB-10368 | biostudies-arrayexpress

de novo re-construction of the core genome from ChIP-Seq for large-genome organisms

Project description:Genetic diversity in plants is remarkably high. Recent whole genome sequencing (WGS) of 67 rice accessions recovered 10,872 novel genes. Comparison of the genetic architecture among divergent populations or between crops and wild relatives is essential for obtaining functional components determining crucial traits. However, many major crops have gigabase-scale genomes, which are not well-suited to WGS. Existing cost-effective sequencing approaches including re-sequencing, exome-sequencing and restriction enzyme-based methods all have difficulty in obtaining long novel genomic sequences from highly divergent population with large genome size. The present study presented a reference-independent core genome targeted sequencing approach, CGT-seq, which employed epigenomic information from both active and repressive epigenetic marks to guide the assembly of the core genome mainly composed of promoter and intragenic regions. This method was relatively easily implemented, and displayed high accuracy, sensitivity and specificity for capturing the core genome of bread wheat. 95% intragenic and 89% promoter region from wheat were covered by CGT-seq read. We further demonstrated in rice that CGT-seq captured hundreds of novel genes and regulatory sequences from a previously unsequenced ecotype. Together, with specific enrichment and sequencing of regions within and nearby genes, CGT-seq is a time- and resource-effective approach to profiling functionally relevant regions in sequenced and non-sequenced populations with large genomes.

2018-05-27 | GSE107827 | GEO

Whole Genome Sequencing

Project description:Whole Genome Sequencing of Sample SRR35276898

| PRJEB97969 | ENA

Whole-genome bisulphite sequencing of met1-3/+

Project description:14 F1 individuals that resulted from crosses between a 420-CEN3 reporter line and met1-3/+ plants were subject to whole-genome bisulphite sequencing alongside Col wild-type and met1-3/+ controls

2015-10-10 | E-MTAB-3927 | biostudies-arrayexpress

Whole genome sequencing

Project description:Whole genome sequencing of evolved Salmonella populations

| PRJEB41487 | ENA