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Bacterial communities from rainwater, throughfall, stemflow, seepage, leave surfaces and soil

ABSTRACT: Rainwater-driven transport of matter and microbes from phyllosphere to soil in a temperate beech forest

PROVIDER: PRJEB92466 | ENA |

REPOSITORIES: ENA

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Transcriptome of Moesziomyces albugensis in response to different biotic factors (A. laibachii & SynCom) on A. thaliana leaves

Project description:As the phyllosphere is a resource-limited niche, microbes have evolved different survival strategies by collaborating or competing with other organisms. This leads to the establishment of network structures which are stabilised by so-called microbial hub organisms. An already identified hub in the Arabidopsis thaliana phyllosphere is the oomycete pathogen Albugo laibachii. From wild Arabidopsis plants with white rust symptoms we isolated the basidiomycete yeast Moesziomyces albugensis, which is closely related to plant pathogenic smut fungi. It suppresses the infection of A. laibachii in lab experiments and inhibits growth of several bacterial phyllosphere members. The transcriptomic response of M. albugensis to presence of A. laibachii and bacterial SynCom members was investigated by using RNA sequencing. Interestingly, several genes encoding secretory proteins, mostly glycoside hydrolases and peptidases, are particularly induced upon interaction with A. laibachii.

2021-01-15 | GSE148670 | GEO

Geochip data of soil microbial community of biomes from three termperature zones

Project description:Here, we applied a microarray-based metagenomics technology termed GeoChip 5.0 to examined functional gene structure of microbes in three biomes, including boreal, temperate and tropical area.

2024-05-10 | GSE172195 | GEO

Transcriptome analysis of Arthrobacter in the phyllosphere

2013-06-21 | GSE48198 | GEO

Phyllosphere

Project description:Temperate forest phyllosphere metagenome assembly

| PRJNA1291777 | ENA

Transcriptome analysis of Arthrobacter in the phyllosphere

Project description:Arthrobacter chlorophenolicus A6 is a 4-chlorophenol degrading soil bacterium with high phyllosphere colonization capacity. Till now the genetic basis for the phyllosphere competency of Arthrobacter or other pollutant-degrading bacteria is uncertain. We investigated global gene expression profile of A. chlorophenolicus grown in the phyllosphere of common bean (Phaseolus vulgaris) compared to growth on agar surfaces. We designed transcriptome arrays and investigated which genes had different transcript levels in the phyllosphere of common bean (Phaseolus vulgaris) as compared to agar surfaces. Since water availability is considered an important factor in phyllosphere survival and activity, we included both high and low relative humidity treatments for the phyllosphere-grown cells. In addition, we determined the expression profile under pollutant exposure by the inclusion of two agar surface treatments, i.e. with and without 4-chlorophenol.

2013-06-21 | E-GEOD-48198 | biostudies-arrayexpress

Bacterial diversity in soil and seepage

Project description:Bacterial community composition of mixed beech forest soils and seepage-mediated translocation from soil of the Hainich Critical Zone Exploratory

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