Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Intestine microbiota of White shrimp Clean sequence reads of 16s V4

PROVIDER: PRJNA1000263 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR25466043.fastq.gz	Fastqsanger.gz
	SRR25466044.fastq.gz	Fastqsanger.gz
	SRR25466045.fastq.gz	Fastqsanger.gz
	SRR25466046.fastq.gz	Fastqsanger.gz
	SRR25466047.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 43

Similar Datasets

Project description:Intestine microbiota of White shrimp Clean sequence reads of 16s V4

| PRJNA1194359 | ENA

White shrimp

Project description:Intestine microbiota of White shrimp 16s rRNA V4 Raw sequence reads

| PRJNA834576 | ENA

Project description:Feeds, intestine, gill, surrounding water, and water sources microbiota of White shrimp Clean sequence reads of 16s rRNA gene in the V3-V4 region

| PRJNA1194054 | ENA

Gut microbiota analysis of kdm5 mutant and the flies with KDM5 knockdown in intestine tissue

Project description:To determine microbiota composition associated with loss of KDM5 in intestine, we carried out 16S rRNA seq analyses of dissected intestine from wildtype and kdm5 mutant. [GSM2628181-GSM2628190]. A total of 78 operational taxonomic units (OTUs) were identified in the sequence data. There were about 15 genera much less abundant in kdm5 mutant compared to wildtype. The kdm5 mutant were sensitive to pathogen. To confirm the microbiota associated with loss of KDM5 in intestine, 16S rRNA of new flies were sequenced and analyzed by Majorbio Bio-Pharm Technology Co. Ltd. (Shanghai, China) [GSM3243472-GSM3243481]. A total of 107 operational taxonomic units (OTUs) were identified in the sequence data. There were about 20 genera much less abundant in kdm5 mutant compared to wildtype. To confirm the microbiota associated with loss of KDM5 drosophila feeding with Lactobacillus plantarum, 16S rRNA of kdm5 mutant flies were sequenced and analyzed by Novogene Bioinformatics Technology Co., Ltd. (Tianjin, China) [GSM3263522-GSM3263527]. A total of 92 operational taxonomic units (OTUs) were identified in the sequence data. To confirm the microbiota associated with KDM5 knockdown in intestine, 16S rRNA of Myo1A-Gal4TS/+ and Myo1A-Gal4TS/+;+/kdm5RNAi flies were sequenced and analyzed by Biomarker Co. Ltd. (Beijing, China). [GSM3507915-GSM3507924]. A total of 50 operational taxonomic units (OTUs) were identified in the sequence data. There was a significant different based on the genus level between two groups.

2019-02-08 | GSE98944 | GEO

High-throughput sequencing of in vitro fecal fermentation samples

Project description:We report the use of high-throughput sequencing technology to detect the microbial composition and abundance of human feces after in vitro co-fermentation with citrus peel flavonoid extracts. The genomic DNA was obtained by the QIAamp PowerFecal DNA Kit. Then, the DNA samples were sent to Biomarker Bio-Tech (Beijing, China) for V3-V4 region of the 16S rDNA gene high-throughput sequencing with an Illumina MiSeq platform. DNA samples were sequenced using primers 338F (forward primer sequence ACTCCTACGGGAGGCAGCAG)-806R (reverse primer sequence GGACTACHVGGGTWTCTAAT). A total of 8,816,250 pairs of Reads were obtained from the 112 samples sequenced, and 8,721,112 Clean Reads were generated from the double-ended Reads after quality control and splicing. The sequencing analyses were carried out using the SILVA database as a reference for the assignation of operational taxonomic units (OTUs) with 97% of identity.

2022-04-02 | GSE199749 | GEO

Project description:Shrimp Intestine Microbiota 16S rRNA

| PRJNA974182 | ENA

Project description:Shrimp Intestine Microbiota 16S rRNA

| PRJNA1050856 | ENA

Microbiota of Breast cancer in Algerian females

Project description:v3-v4 16S rRNA sequencing was used to characterize the differences in microbiota between specimens of breast cancer and healthy surrounding tissue in adult Algerian females

2025-07-30 | GSE243440 | GEO

Microbiota profiling of caecal contents from conventional chickens beetween 7 and 21 days of age

Project description:Here we tracked the development of the caecal microbiota in conventional White leghorn chickens of the PA2 line kept in isolators for 7 14 or 21 days using 16S sequencing.

2024-08-28 | E-MTAB-14270 | biostudies-arrayexpress

Project description:Shrimp Intestine Microbiota 16S rDNA Sequencing

| PRJNA607623 | ENA