Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Fungal communities of decomposing Populus grandidentata wood

PROVIDER: PRJNA1021817 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR26222449_1.fastq.gz	Fastqsanger.gz
	SRR26222449_2.fastq.gz	Fastqsanger.gz
	SRR26222450_1.fastq.gz	Fastqsanger.gz
	SRR26222450_2.fastq.gz	Fastqsanger.gz
	SRR26222451_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 47

Similar Datasets

Comparative transcriptomic analysis of a wood decomposing fungus in various atmospheres

Project description:AIM: By adopting comparative transcriptomic approach, we investigated the gene expression of wood decomposing Basidiomycota fungus Phlebia radiata. Our aim was to reveal how hypoxia and lignocellulose structure affect primary metabolism and the expression of wood decomposition related genes. RESULTS: Hypoxia was a major regulator for intracellular metabolism and extracellular enzymatic degradation of wood polysaccharides by the fungus. Our results manifest how oxygen depletion affects not only over 200 genes of fungal primary metabolism but also plays central role in regulation of secreted CAZyme (carbohydrate-active enzyme) encoding genes. Based on these findings, we present a hypoxia-response mechanism in wood-decaying fungi divergent from the regulation described for Ascomycota fermenting yeasts and animal-pathogenic species of Basidiomycota.

2020-02-01 | GSE141153 | GEO

Dynamics of wood decay under anoxia

Project description:Identification of wood-decomposing fungi and their secreted enzymes at different wood proximal depths.

2025-09-15 | PXD048319 | Pride

Project description:Fungal ITS and prokaryotic 16S diversity in decomposing wood

| PRJNA756463 | ENA

Project description:Fungal community associated with decomposing wood in Western Carpathian forest

| PRJNA693561 | ENA

Microbial metaproteome data from decayed beech dead wood

Project description:Wood-decomposition in terrestrial ecosystems is a very important process with huge ecologic consequences. This decomposition process is a combination of biological respiration, leaching and fragmentation, mainly triggered by organismic activities. In order to gain a deeper insight into these microbial communities and their role in deadwood decay, we used metaproteomics. Metaproteomics is an important tool and offers the ability to characterize the protein complement of environmental microbiota at a given point in time. In this dataset, we provide data of an exemplary beech wood log and applied different extraction methods to provide the proteome profile of beech dead wood and their corresponding fungal-bacterial community.

2020-05-27 | PXD016801 | Pride

Puerto Rican fungal communities associated with decomposing wood following Hurricane Maria

Project description:Puerto Rican fungal communities associated with decomposing wood following Hurricane Maria Targeted loci environmental

| PRJNA560937 | ENA

Transcriptomic and proteomic analysis of Trametes versicolor interacting with a Hypholoma fasciculare mycelium foraging in soil

Project description:The decomposition of large woody material is an important process in forest carbon cycling and nutrient release. Cord-forming saprotrophic basidiomycete fungi create non-resource limited mycelial networks between decomposing branches, logs and tree stumps on the forest floor where colonisation of new resource is often associated with the replacement of incumbent decay communities. Cord-forming species often dominate competition hierarchies in controlled paired antagonism experiments and have been shown to translocate resource to support colonisation and produce inhibitory metabolites. To date, antagonism experiments have mostly placed competing fungi in direct contact, while in nature cord-forming saprobes encounter colonised wood as mycelia in a network. Here we used soil-based microcosms that allowed foraging cord-forming Hypholoma fasciculare to encounter a wood block colonised by Trametes versicolor and conducted transcriptomic and proteomic analysis of the interaction. Cellular processes and metabolic responses to the competitive interaction were identified, where protein turnover featured strongly for both species. H. fasciculare demonstrated an exploitative profile with increased transcription of enzymes that targeted carbohydrate polymers of the substrate and in RNA and ribosome processing. T. versicolor showed a shift in signalling, energy generation and amino acid metabolism. Putative genes involved in secondary metabolite production were identified in both species. This study highlights the importance of ecologically-relevant experimental design when considering complex processes such as community development during wood decomposition

2024-09-20 | GSE245088 | GEO

Project description:Fungal communities on decomposing mammalian cadavers

| PRJNA516254 | ENA

RNAseq of bending treated Populus trichocarpa

Project description:We treated 6 month Populus trichocarpa by bending for 0, 3, and 7 days to see effects of bending treatment on wood formation at transcript level

2020-07-05 | GSE153793 | GEO

Project description:Fungal community associated with decomposing wood in alluvial hardwood temperate forest

| PRJNA681341 | ENA