Project description:Adult male grass shrimp were exposed for 96 hours to LC50 concentrations of either Fipronil, Endosulfan, or Cadmium, as well as a Carrier Control exposure. RNA was extracted from whole-body homogenates using the RNABee kit. Tags were clustered to identify tags diagnostic of the different exposures. Keywords: SAGE, Grass shrimp, ecotoxicogenomics

2006-05-18 | GSE4853 | GEO

litopenaeus vannamei culture pond sediment

Project description:litopenaeus vannamei culture pond sediment Raw sequence reads

| PRJNA646333 | ENA

shrimp intestinal tract and shrimp pond water

Project description:Microbial community of shrimp aquaculture

| PRJNA429671 | ENA

Grass shrimp SAGE libraries

2006-05-18 | E-GEOD-4853 | biostudies-arrayexpress

shrimp culture metagenome_haiyang

Project description:Bacterial community structure in recirculating aquaculture systems of shrimp

| PRJNA600797 | ENA

Single-cell RNA sequencing of Pacific white shrimp hepatopancreas infected with Vibrio parahaemolyticus

Project description:The shrimp aquaculture industry is vulnerable to large losses due to acute hepatopancreatic necrosis disease (AHPND), caused by the bacterium Vibrio parahaemolyticus. The mechanism by which the pathogen causes disease, and the host immune response, is not completely understood. The shrimp hepatopancreas is a multi-functional organ with roles in digestion, immunity, molting and reproduction. Therefore, we set out to characterize the cells of the hepatopancreas and the host response to Vibrio parahaemolyticus infection at single-cell resolution. The hepatopancreas from three individual shrimp were processed to create a single-cell transcriptomic atlas. Then the hepatopancreas from three Vibrio parahaemolyticus infected and two mocked treated shrimp were sampled for infection study. All single-cell libraries were generated using the 10X Genomics platform and sequenced on an Illumina sequencer. Data were aligned to the Litopenaeus vannamei reference genome using Cell Ranger. Seurat and clusterProfiler were used for downstream analyses. Cells of the hepatopancreas were characterized and the transcriptomic response to AHPND-causing V. parahaemolyticus was examined. Data will inform further functional studies and has the potential to aid in the development of novel preventative measures or treatments.

2026-02-18 | GSE306674 | GEO

shrimp gut metagenome

Project description:Microbiome Dynamics in a Shrimp Grow-out Pond

| PRJNA380029 | ENA