Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Aspergillus fumigatus strain:47-4

ABSTRACT: Aspergillus fumigatus 47-4 genome sequencing and assembly

PROVIDER: PRJNA1078810 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SRR28035400_1.fastq.gz	Fastqsanger.gz
	SRR28035401_1.fastq.gz	Fastqsanger.gz
	SRR28035401_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 4 of 4

Similar Datasets

Aspergillus fumigatus strain:47-10

Project description:Aspergillus fumigatus 47-10 genome sequencing and assembly

| PRJNA1078800 | ENA

Comparative genomic hybridization of Aspergillus fumigatus Af71, Aspergillus fumigatus Af294, Aspergillus clavatus, Neosartorya fenneliae and Neosartorya fischeri with Aspergillus fumigatus Af293

Project description:Genomic DNA from five strains, Aspergillus fumigatus Af71, Aspergillus fumigatus Af294, Aspergillus clavatus, Neosartorya fenneliae, and Neosartorya fischeri, were co-hybridized with that of Aspergillus fumigatus Af293 and compared.

2005-05-15 | E-MEXP-333 | biostudies-arrayexpress

3' poly(A)-RNA-End sequencing of Aspergillus fumigatus strain CEA10

Project description:Experimantal validation for the 3' end of poly(A)-RNA in Aspergillus fumigatus is currently lacking. Therefore we performed 3'RNA-End sequencing from 24-h mycelium grown in AMM at 37°C and 42°C with a library kit purchased from Eclipse Bioinnovations.

2025-07-04 | GSE296592 | GEO

5' poly(A)-RNA-End sequencing of Aspergillus fumigatus strain CEA10

Project description:Experimantal validation for the 5' end of poly(A)-RNA in Aspergillus fumigatus is currently lacking. Therefore we performed 5'RNA-End sequencing from 24-h mycelium grown in AMM at 37°C and 42°C with a library prepration kit purchased from Eclipse Bioinnovations.

2025-07-04 | GSE296591 | GEO

Transcriptome of human macrophages infected with Aspergillus fumigatus

Project description:RNA sequencing data from human monocyte-derived macrophages after infection with Aspergillus fumigatus.

2020-03-31 | GSE128661 | GEO

Poly(A)-RNA-Seq sequencing of Aspergillus fumigatus strain CEA10 at 37°C and 42°C

Project description:Experimantal validation for the 5' and 3' ends of poly(A)-RNA in Aspergillus fumigatus is currently lacking. The dataset here was used a total RNA-Seq control for poly(A)-enriched RNAs of Aspergillus fumigatus in comparison with 5' and 3' End-Seq data.

2025-07-04 | GSE296590 | GEO

Next Generation Sequencing of HUVECs stimulated by conidia of Aspergillus fumigatus

Project description:Purpose: The goal of this study is to investigate the responses of HUVECs after the stimulation of conidia of A. fumigatus Methods: HUVECs were stimulated with conidia of Aspergillus fumigatus for 2 and 6 hours. Three biological repeats of stimulated cells or un-stimulated controls were send for RNA sequencing. Results: Using an optimized data analysis workflow, we mapped about 40 million sequence reads per sample to the human genome (build hg38) and identified round 80,000 transcripts in the HUVECs upon stimulation. Conclusions: Our resutls showed the detailed analysis of HUVECs transcriptomes upton conidia of Aspergillus fumigatus stimulation.

2022-03-29 | GSE191240 | GEO

Effect of amphotericin B on Aspergillus fumigatus

Project description:Amphotericin B (AMB) is the most widely used polyene antifungal drug for the treatment of systemic fungal infections including invasive aspergillosis. We aimed to understand molecular targets of AMB in Aspergillus fumigatus (Afu) by genomic approaches. Keywords: Aspergillus fumigatus treated with amphotericin B for 24 hours

2008-02-14 | GSE10505 | GEO

Small RNA sequencing of Aspergillus fumigatus

Project description:Aspergillus fumigatus is an important human pathogen and a leading fungal killer. This study aimed to determine the small RNA repertoire of A. fumigatus in conidia and mycelium grown for 24 or 48 hours in liquid culture.

2023-02-14 | GSE223619 | GEO

tRF & tiRNA sequencing of Aspergillus fumigatus

Project description:Aspergillus fumigatus is an important human pathogen and a leading fungal killer. This study aimed to determine the tRNA fragment and tRNA half repertoire of A. fumigatus in wild-type conidia and mycelium grown for 24 or 48 hours in liquid culture.

2024-05-25 | GSE267453 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data