Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Genotyping by sequencing of Iberian Unio tumidiformis populations

PROVIDER: PRJNA1087543 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR28340934_1.fastq.gz	Fastqsanger.gz
	SRR28340934_2.fastq.gz	Fastqsanger.gz
	SRR28340935_1.fastq.gz	Fastqsanger.gz
	SRR28340935_2.fastq.gz	Fastqsanger.gz
	SRR28340936_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 120

Similar Datasets

Project description:Genotyping by Sequencing of Iberian Margaritifera margaritifera populations

| PRJNA876830 | ENA

Project description:Genotyping by Sequencing of Iberian Squalius species

| PRJNA751527 | ENA

Protein markers of Bursaphelenchus xylophilus Steiner & Buhrer, 1934 (Nickle, 1970) populations using quantitative proteomics and character compatibility

Project description:The Pine Wood Nematode (PWN) Bursaphelenchus xylophilus is a severe forest pathogen in countries where it has been introduced and is considered a worldwide quarantine organism. In this study, protein markers for differentiating populations of this nematode were identified by studying differences among four selected Iberian and one American population. These populations were compared by quantitative proteomics (iTRAQ), which considers the level of protein expression. From a total of 2862 proteins identified using the public database from the B. xylophilus genome project, 216 were unambiguous and significantly differentially expressed in the studied populations. Comparisons of their pairwise ratio were statistically treated and supported in order to convert them into discrete character states, suggesting that 141 proteins were not informative as population specific markers. Application of the Character Compatibility methodology on the remaining 75 proteins (belonging to families with different biological functions) excludes 27 which are incompatible among them. Considering only the compatible proteins, the method selects a subset of 34 specific unique protein markers which allowed the compared classification of the Iberian isolates. This approach makes it easier search for diagnostic tools and phylogenetic inference within species and populations of a pathogen exhibiting a high level of genetic diversity.

2018-07-05 | PXD003129 | Pride

“PALAEOSHELLOMICS” REVEALS THE USE OF FRESHWATER MOTHER-OF-PEARL IN PREHISTORIC ORNAMENTS.

Project description:Palaeoproteomics analysis of mollusc shells (Modiolus modiolus, Ostrea edulis, Unio pictorum, Margaritifera margaritifera, Unio crassus, Pseudunio auricularius) and shell ornaments (double-buttons) from Neolithic European sites (Havnø, Hornstaad-Hörnle IA, Peştera Ungurească).

2019-05-08 | PXD011985 | Pride

Homo sapiens strain:(IBS) Iberian populations in Spain

Project description:Exome sequencing of (IBS) Iberian populations in Spain HapMap population

| PRJNA59819 | ENA

Population genetics context of ancient human genome sequence of an extinct Palaeo-Eskimo

Project description:To study the population genetics context of the Saqqaq individual we carried out Illumina Bead-Array-based genotyping on four native North American and twelve north Asian populations.

2010-11-30 | GSE22494 | GEO

Betta splendens

Project description:Genotyping by sequencing of Betta splendens populations

| PRJDB7255 | ENA

Project description:Gill transcriptome assembly from 5 Unionida freshwater mussels: Margaritifera margaritifera, Unio crassus, Unio pictorum, Unio mancus and Unio delphinus

| PRJNA839062 | ENA

Project description:Genotyping of triploid banana populations

| PRJNA1106767 | ENA

Genetic heritage of the Balto-Slavic speaking populations: a synthesis of autosomal, mitochondrial and Y-chromosomal data

Project description:Here we present genome-wide genotyping data of 70 human samples from Europe (Balto-Slavic speakers, Greeks) that are used in addition to public data in a study of genetic heritage of the Balto-Slavic populations.

2015-07-18 | GSE71049 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data