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ABSTRACT: The microbiome composition of protocorms in the terrestrial orchid Gymnadenia conopsea.

PROVIDER: PRJNA1098998 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR28714900_1.fastq.gz	Fastqsanger.gz
	SRR28714900_2.fastq.gz	Fastqsanger.gz
	SRR28714901_subreads.fastq.gz	Fastqsanger.gz
	SRR28714902_1.fastq.gz	Fastqsanger.gz
	SRR28714902_2.fastq.gz	Fastqsanger.gz

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Large-scale transcriptomics provides insights on the mycorrhizal symbiosis of the Mediterranean orchid Limodorum abortivum in nature

Project description:The study of orchid mycorrhizal interactions is particularly complex because of the peculiar life cycle of these plants and their diverse trophic strategies. Here, large-scale transcriptomics has been applied to investigate gene expression in the mycorrhizal roots of the terrestrial mixotrophic orchid Limodorum abortivum under natural conditions. Our results provide new insights into the mechanisms underlying plant-fungus interactions in orchids and in particular on the plant responses to the mycorrhizal symbiont(s) in adult roots. Comparison with gene expression in mycorrhizal roots of another orchid species, Oeceoclades maculata, suggests that amino acids may represent the main nitrogen source in both protocorms and adult orchids, at least for mixotrophic species. The upregulation, in mycorrhizal L. abortivum roots, of some symbiotic molecular marker genes identified in mycorrhizal roots from other orchids as well as in arbuscular mycorrhiza, suggests a common plant core of genes in endomycorrhizal symbioses. Further efforts will be required to understand whether the specificities of orchid mycorrhiza depend on fine-tuned regulation of these common components, or whether specific additional genes are involved.

2021-01-31 | GSE159700 | GEO

Project description:Gymnadenia conopsea Raw sequence reads

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Project description:Studies of root-associated microbiomes in Gymnadenia conopsea

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Project description:raw sequences of endophytic bacteria of Gymnadenia conopsea

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Project description:Studies of root-associated bacterial microbiomes in Gymnadenia conopsea

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Project description:The raw sequence of endophytes and soil fungi of Gymnadenia conopsea

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Project description:raw sequences of bacteria in the rhizosphere soils of Gymnadenia conopsea

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Project description:16S rDNA sequence of different protocrom stages of Gymnadenia conopsea Raw sequence reads

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Gene expression changes in Tulasnella calospora - Serapias vomeracea mycorrhizal protocorms at stage P2 compared to asymbiotic, achlorophyllous Serapias vomeracea protocorms

Project description:Illumina HiSeq technology was used to generate mRNA profiles from Serapias vomeracea-Tulasnella calospora mycorrhizal protocorms compared to asymbiotic protocorms . Protocorms were harvested at stage P2 and used for RNA extraction. Reads of 150bp were generated and aligned to a de novo transcriptome assembly from Serapias vomeracea using CLC Genomics Workbench 9.

2016-12-01 | GSE87120 | GEO

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