Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: ileum mucosa transcriptome of rabbit

PROVIDER: PRJNA1105390 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR28823025_1.fastq.gz	Fastqsanger.gz
	SRR28823025_2.fastq.gz	Fastqsanger.gz
	SRR28823026_1.fastq.gz	Fastqsanger.gz
	SRR28823026_2.fastq.gz	Fastqsanger.gz
	SRR28823027_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 24

Similar Datasets

Project description:Ileum mucosa transcriptome profile of growing pigs

| PRJNA747849 | ENA

Project description:Ileum mucosa sequencing of pig

| PRJNA1063880 | ENA

Ileal transcriptome profiles of pigs divergent in feed efficiency

Project description:in vivo microarray study of transcriptional changes of ileum (mucosa) obtained from pigs divergent in feed efficiency

2020-04-28 | GSE142434 | GEO

Bacterial and host proteins along and across the porcine GIT

Project description:Digesta and mucosa samples from stomach, jejunum, ileum, cecum and colon of the porcine GIT from four animals were analysed by metaproteomics to obtain a deeper insight into the functions of bacterial groups with a concomitant analyses of host proteins.

2019-01-21 | PXD011360 | Pride

The cellular heterogeneity and dynamics of bladder mucosa under homeostasis and injured conditions

Project description:To comprehensively explore the cellular heterogeneity and dynamics of bladder mucosa under homeostasis and injured conditions, we performed droplet-based scRNA-seq using the 10x Genomics Single Cell Solution on samples isolated from injured and normal rabbit bladder. Here the scRNA-seq data demonstrated that urothelial differentiation and regeneration occur in a linear fashion, with a single origin of basal stem/progenitor cell progressively differentiating into intermediate and superficial umbrella cells. And, Basal cell_2 cells expressing TP63 and higher KRT5 as stem/progenitor cell of rabbit bladder urothelium in normal mucosa-injured conditions.

2025-06-16 | GSE297503 | GEO

Chicken ileum mucosa

Project description:Chicken ileum mucosa Raw sequence reads

| PRJNA605070 | ENA

Transcription profiling of rat ileum mucosa and Peyers patches in the small intestine at different time points following Salmonella infection

Project description:Time dependent effect of Salmonella infection on host gene expression in vivo in the ileum mucosa and Peyers patches.

2007-04-02 | E-MEXP-636 | biostudies-arrayexpress

Expression data of ileal mucosa in developing piglets

Project description:The transcriptome changes of the ileal mucosa in suckling piglets during early postnatal life were analysed to contribute to the knowledge of a pig’s gut development. In addition, the ileal transcriptome of suckling piglets was compared with that of age-matched weaned piglets (weaned at the age of 21 days) to elucidate the effect of weaning on the developing gut. DNA microarray was used to analyse the change of transcriptome profiles and biological pathways in porcine ileum that occurred during the developmental or the weaning process.

2015-09-30 | GSE65008 | GEO

Ileum and colon mucosa

Project description:Ileum and colon mucosa Raw sequence reads

| PRJNA480731 | ENA

In vivo RNA-sequencing of Vibrio cholerae during intestinal colonization of infant rabbits

Project description:To understand how cholera toxin (CT) produced by Vibrio cholerae modulates gene expression of this organism within the intestine, RNA-seq analysis was performed on two samples each of WT and the ∆ctx mutant bacteria harvested from either the infant rabbit ileum or the cecum one-day post-intragastric infection. We found that 243 genes that were significantly up-regulated in the WT compared to the ∆ctx mutant and these included 101 genes in ileum samples, 118 in the cecum samples, and 24 in both samples. We found that genes known to be induced under low-iron growth conditions were up-regulated in WT relative to the ∆ctx mutant in both the ileum and in the cecum, with a marked up-regulation in the ileum relative to the cecum. We also found that genes involved in TCA cycle metabolism, L-Lactate utilization, and LCFA utilization were significantly up-regulated in the WT in the ileum relative to the ∆ctx mutant during infection. We conclude that CT-induced disease creates an iron-depleted metabolic niche in the gut that modulates the transcriptional profile of this pathogen during infection.

2019-07-31 | GSE132653 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data