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Pontinus rathbuni

ABSTRACT: Pontinus rathbuni (highfin scorpionfish), fPonRat1

PROVIDER: PRJNA1105406 | ENA |

REPOSITORIES: ENA

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Dataset's files

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			Action	DRS
		Other
	SRR29468203_1.fastq.gz	Fastqsanger.gz
	SRR29468203_2.fastq.gz	Fastqsanger.gz
	SRR29419579_subreads.fastq.gz	Fastqsanger.gz

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Pontinus rathbuni

Project description:Pontinus rathbuni (highfin scorpionfish) genomic and transcriptomic data

| PRJNA1105407 | ENA

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Pontinus rathbuni

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Characterizing the regenerative capacity and growth patterns of the Texas blind salamander (Eurycea rathbuni).

Project description:BackgroundRegeneration of complex patterned structures is well described among, although limited to a small sampling of, amphibians. This limitation impedes our understanding of the full range of regenerative competencies within this class of vertebrates, according to phylogeny, developmental life stage, and age. To broaden the phylogenetic breath of this research, we characterized the regenerative capacity of the Texas blind salamander (Eurycea rathbuni), a protected salamander native to the Edwards Aquifer of San Marcos, Texas and colonized by the San Marcos Aquatic Resource Center. As field observations suggested regenerative abilities in this population, the forelimb stump of a live captured female was amputated in the hopes of restoring the structure, and thus locomotion in the animal. Tails were clipped from two males to additionally document tail regeneration.ResultsWe show that the Texas blind salamander exhibits robust limb and tail regeneration, like all other studied Plethodontidae. Regeneration in this species is associated with wound epithelium formation, blastema formation, and subsequent patterning and differentiation of the regenerate.ConclusionsThe study has shown that the Texas blind salamander is a valuable model to study regenerative processes, and that therapeutic surgeries offer a valuable means to help maintain and conserve this vulnerable species.

| S-EPMC8454265 | biostudies-literature

Project description:Mediterranean scorpionfish gut (mucosa) microbiota

| PRJNA954707 | ENA

Project description:Eurycea rathbuni genetic diversity RADseq study

| PRJNA655755 | ENA

Project description:A chromosome-dlevel genome assembly of the highfin moray (Gymnothorax pseudothyrsoideus) (Bleeker, 1852) provides insights into its adaptive evolution

| PRJNA911966 | ENA

Whole genome bisulfite sequencing of liver samples of five mammals (human, rhesus macaque, mouse, rat and dog)

Project description:This study aims to investigate the DNA methylation patterns at transcription factor binding regions and their evolutionary conservation with respect to binding activity divergence. We combined newly generated bisulfite-sequencing experiments in livers of five mammals (human, macaque, mouse, rat and dog) and matched publicly available ChIP-sequencing data for five transcription factors (CEBPA, HNF4a, CTCF, ONECUT1 and FOXA1). To study the chromatin contexts of TF binding subjected to distinct evolutionary pressures, we integrated publicly available active promoter, active enhancer and primed enhancer calls determined by profiling genome wide patterns of H3K27ac, H3K4me3 and H3K4me1.

2022-10-20 | E-MTAB-11946 | biostudies-arrayexpress

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