Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Transcriptome data of Pleurotus ostreatus

PROVIDER: PRJNA1150065 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR30310279_1.fastq.gz	Fastqsanger.gz
	SRR30310279_2.fastq.gz	Fastqsanger.gz
	SRR30310280_1.fastq.gz	Fastqsanger.gz
	SRR30310280_2.fastq.gz	Fastqsanger.gz
	SRR30310281_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 12

Similar Datasets

Impact of transposable elements in Pleurotus ostreatus transcriptome profiles

Project description:Pleurotus ostreatus, also known as the oyster mushroom, is an active lignin decomposer in the forests. The genomes of the monokaryotic strains PC15 and PC9 have been used to characterize the content and distribution of transposable elements. This study analyzes the impact of transposable element insertions on the global transcriptome of P. ostreatus. The transcriptome of PC15 and PC9 has been analyzed in exponential growth during submerged fermentation in malt-yeast extract-sucrose medium RNAseq of two P. ostreatus strains: PC15 and PC9

2016-05-19 | E-GEOD-81586 | biostudies-arrayexpress

Gene age predicts the transcriptional landscape of sexual morphogenesis in multicellular fungi [Pleos]

Project description:Pleurotus ostreatus tissue types and developmental stages

2021-06-05 | GSE176179 | GEO

Impact of transposable elements in Pleurotus ostreatus transcriptome profiles

2016-05-19 | GSE81586 | GEO

Transcriptomes of Pleurotus ostreatus in four different development stages (mycelium, primordium, young fruit body, mature fruit body)

Project description:To elucidate the mechanisms of fruit body development in Pleurotus ostreatus, the transcriptomes of four different development stages including mycelium, primordium, young fruit body, and mature fruit body were obtained by RNA-seq.

2018-04-12 | GSE113026 | GEO

Pleurotus ostreatus strain:PC9/PC15

Project description:Transcriptome of Pleurotus ostreatus

| PRJNA319793 | ENA

Gene expression induced by blue light stimulation to oyster mushroom mycelia

Project description:Photoresponse mechanism of oyster muchroom mycelia was studied using a custom microarray prepared on the basis of the genome information (Pleurotus ostreatus PC15 v2.0) in JGI Genome Portal. Blue light stimulation to the mycelia caused the up-regulation and down-regulation of genes expression. Particulary, the genes coding rate-controlling enzymes in glycolysis, pentose phosphate, and sikimic acid pathways were up-regulated to accumulate shikimic acid dramatically.

2017-02-09 | GSE58522 | GEO

RNA-seq profiling of Pleurotus ostreatus exposed to BBP with or without cytochrome P450 inhibition

Project description:This study provides transcriptomic insights into the degradation of butyl benzyl phthalate (BBP) by the white-rot fungus Pleurotus ostreatus. RNA-seq was conducted for samples treated with BBP alone or in combination with the cytochrome P450 inhibitor piperonyl butoxide (PB). The aim was to investigate the role of fungal enzymes in BBP metabolism. Differentially expressed genes related to xenobiotic degradation, oxidative stress, and P450 activity were identified and analyzed.

2025-08-01 | GSE302615 | GEO

Pleurotus ostreatus

Project description:Pleurotus ostreatus Genome sequencing

| PRJNA252755 | ENA

gfPleOstr

Project description:Pleurotus ostreatus (oyster mushroom)

| PRJEB52213 | ENA

LC-MS/MS secretome analysis of Pleurotus ostreatus PC9 (wild type) and two transformants

Project description:The white rot fungi Pleurotus ostreatus was studied for its potential as a biological pretreatment agent, i.e- its potential for decomposing lignocellulosic biomass. P. ostreatus PC9 was manipulate to either overexpress or eliminate (by gene replacement) the transcriptional regulator CRE1, known to act as a repressor in the process of carbon catabolite repression. The parental PC9 and the two transformants were grown on microcrystalline cellulose and wheat straw (3 replicates each) and the content of the resulted secretomes was analyzed by LC-MS/MS. An extensive range of carbohydrate active enzymes (CAZymes) were affected by the modification of cre1 expression levels. The three fungi revealed also differentiation towards the carbon source used in the growth media.

2018-08-06 | PXD010100 | Pride

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data