Ontology highlight
ABSTRACT:
PROVIDER: PRJNA1161408 | ENA |
REPOSITORIES: ENA
Dataset's files
| Action | DRS | |||
|---|---|---|---|---|
| SRR30670373_1.fastq.gz | Fastqsanger.gz | |||
| SRR30670373_2.fastq.gz | Fastqsanger.gz | |||
| SRR30670374_1.fastq.gz | Fastqsanger.gz | |||
| SRR30670374_2.fastq.gz | Fastqsanger.gz | |||
| SRR30670375_1.fastq.gz | Fastqsanger.gz |
Items per page: 5 1 - 5 of 36 |
Similar Datasets
Project description:Reforestation is effective in restoring ecosystem functions and enhancing ecosystem services of degraded land. The three most commonly employed reforestation methods of natural reforestation, artificial reforestation with native Masson pine (Pinus massoniana Lamb.), and introduced slash pine (Pinus elliottii Engelm.) plantations were equally successful in biomass yield in southern China. However, it is not known if soil ecosystem functions, such as nitrogen (N) cycling, are also successfully restored. Here, we employed a functional microarray to illustrate soil N cycling. The composition and interactions of N-cycling genes in soils varied significantly with reforestation method. Natural reforestation had more superior organization of N-cycling genes, and higher functional potential (abundance of ammonification, denitrification, assimilatory, and dissimilatory nitrate reduction to ammonium genes) in soils, providing molecular insight into the effects of reforestation.
2019-11-04 | GSE100379 | GEO
Project description:In this study, Pinus yunnanensis was used as the experimental material, with a total of 12 samples assigned into four groups: CK_12, CK_6, T5_12 and T9_6. TMT labeling quantitative proteomics technology was applied, and protein detection was performed using liquid chromatography coupled with tandem mass spectrometry (LC-MS/MS). Raw mass spectrometry data were processed for quality control, protein identification and quantification. Differentially expressed proteins (DEPs) among groups were screened. Subsequent bioinformatics analyses were conducted, including GO functional enrichment, KEGG metabolic pathway enrichment, protein-protein interaction network analysis, hub node analysis and protein cluster analysis. This work systematically reveals the alterations in protein expression and underlying molecular regulatory mechanisms of Pinus yunnanensis under different treatments. A total of 319 proteins were identified in this experiment, and multiple sets of significantly differentially expressed proteins were obtained via intergroup comparison. The results provide valuable proteomic data for exploring the physiological and molecular mechanisms of Pinus yunnanensis.
2026-06-12 | PXD079689 |
Project description:The effects of two years' winter warming on the overall fungal functional gene structure in Alaskan tundra soil were studies by the GeoChip 4.2 Resuts showed that two years' winter warming changed the overall fungal functional gene structure in Alaskan tundra soil.
2019-03-07 | GSE127899 | GEO
Project description:Anthropogenic nutrient inputs alter soil biodiversity; however, it remains largely unknown whether changes in soil microeukaryotes (fungi and protists) are primarily driven by direct effects, such as modifications in soil properties, or by indirect effects, such as plant diversity loss. To disentangle these mechanisms, we investigated the long-term effects (11 years) of fertilization and manipulated plant diversity (1, 2, or 4 plant species) on soil microeukaryote communities in a temperate grassland experiment using long-amplicon rRNA sequencing. Our results indicate that fertilization generally had a stronger influence on microeukaryote communities than plant species richness. Fertilization altered the community composition of fungi and protists, increased OTU richness by 20.8% and 52.7%, respectively, and shifted community dominance from fungi to protists. Regarding plant diversity, we observed an effect exclusively on the protist community. Changes were primarily explained by increased plant biomass (driven by both fertilization and plant diversity) and by higher soil phosphorus and lower soil pH levels (driven exclusively by fertilization). Regarding life strategies, we observed synergistic treatment effects: fertilization primarily enhanced fungal saprophytes (only richness), fungal animal pathogens, and protist consumers, whereas plant diversity affected phototrophic protists (reduction) and protist animal pathogens (enhancement). Notably, fertilization and plant diversity decline together led to a cumulative increase in fungal plant pathogens. In conclusion, we highlight that fertilisation alone has a significant effect on soil microeukaryotes, while the additional decline in plant diversity affects different soil groups that are not directly affected by fertilisation. This synergistic pattern indicates that fertilization can influence the entire microeukaryote community through direct and indirect mechanisms, with a cumulative enhancement on certain groups, such as plant pathogens.
2026-07-06 | E-MTAB-15101 | biostudies-arrayexpress