Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: An eDNA survey of aquatic plant biodiversity in an urban dam in Johannesburg, South Africa

PROVIDER: PRJNA1163254 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR30733632.fastq.gz	Fastqsanger.gz
	SRR30733633.fastq.gz	Fastqsanger.gz
	SRR30733634.fastq.gz	Fastqsanger.gz
	SRR30733635.fastq.gz	Fastqsanger.gz
	SRR30733636.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 10

Similar Datasets

mbrave workshop paper

Project description:Urban biodiversity assessment by aquatic eDNA sampling

| PRJEB37589 | ENA

Project description:Molecular characterization of Escherichia coli collected from an urban river in Johannesburg South Africa

| PRJNA1187560 | ENA

Project description:eDNA metabarcoding for biomonitoring of fish biodiversity after a dam construction

| PRJNA496021 | ENA

Mukandavire2020 - SEIR model of early COVID-19 transmission in South Africa

Project description:The emergence and fast global spread of COVID-19 has presented one of the greatest public health challenges in modern times with no proven cure or vaccine. Africa is still early in this epidemic, therefore the extent of disease severity is not yet clear. We used a mathematical model to fit to the observed cases of COVID-19 in South Africa to estimate the basic reproductive number and critical vaccination coverage to control the disease for different hypothetical vaccine efficacy scenarios. We also estimated the percentage reduction in effective contacts due to the social distancing measures implemented. Early model estimates show that COVID-19 outbreak in South Africa had a basic reproductive number of 2.95 (95% credible interval [CrI] 2.83–3.33). A vaccine with 70% efficacy had the capacity to contain COVID-19 outbreak but at very higher vaccination coverage 94.44% (95% Crl 92.44–99.92%) with a vaccine of 100% efficacy requiring 66.10% (95% Crl 64.72–69.95%) coverage. Social distancing measures put in place have so far reduced the number of social contacts by 80.31% (95% Crl 79.76–80.85%). These findings suggest that a highly efficacious vaccine would have been required to contain COVID-19 in South Africa. Therefore, the current social distancing measures to reduce contacts will remain key in controlling the infection in the absence of vaccines and other therapeutics.

2024-09-02 | BIOMD0000000978 | BioModels

Project description:Characterization of Vibrio cholerae from the Jukskei River in Johannesburg, South Africa

| PRJNA1187901 | ENA

Project description:Characterization of Vibrio cholerae from the Jukskei River in Johannesburg South Africa

| PRJNA1187165 | ENA

Project description:A novel Carbapenemase-carrying Hypervirulent Klebsiella pneumoniae isolate identified in Johannesburg, South Africa

| PRJNA1219545 | ENA

Project description:Genomic characterization of Shigella species from the Jukskei River in Johannesburg South Africa

| PRJNA1216622 | ENA

Providencia rettgeri strain:JRPR003

Project description:Characterization of of enteric pathogens from the Jukskei River in Johannesburg South Africa

| PRJNA1040482 | ENA

Project description:Coastal Aquatic Biodiversity

| PRJNA1237844 | ENA

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data