Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Aphid

ABSTRACT: aphid symbiotic flora

PROVIDER: PRJNA1173097 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR31089100.fastq.gz	Fastqsanger.gz
	SRR31089200.fastq.gz	Fastqsanger.gz
	SRR31089300.fastq.gz	Fastqsanger.gz
	SRR31089400.fastq.gz	Fastqsanger.gz
	SRR31089101.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 321

Similar Datasets

Phenotypic plasticity in the pea aphid Acyrthosiphon pisum: miRNA sequencing

Project description:Bioinformatic prediction, deep sequencing of microRNA and expression analysis during phenotypic plasticity in the pea aphid acyrthosiphon pisum We developed high throughput Solexa sequencing and bioinformatic analyses of the genome of the pea aphid Acyrthosiphon pisum in order to identify the first miRNAs from a hemipteran insect. By combining these methods we identified 155 miRNAs including 56 conserved and 99 new miRNAs. Moreover, we investigated the regulation of these miRNAs in different alternative morphs of the pea aphid by analysing the expression of miRNAs across the switch of reproduction mode.

2010-03-01 | GSE20107 | GEO

An aphid lncRNA is a member of an aphid-specific family that translocate into plant and is a virulence factor [FeedingSite Expt]

Project description:This study provides evidence that aphid lncRNAs play a role in regulating aphid-plant interactions and at least one M. persicae lncRNA is a virulence factor

2020-06-03 | GSE129668 | GEO

An aphid lncRNA is a member of an aphid-specific family that translocates into plant and is a virulence factor [HostSwap Expt]

Project description:This study provides evidence that aphid lncRNAs play a role in regulating aphid-plant interactions and at least one M. persicae lncRNA is a virulence factor

2020-06-03 | GSE129667 | GEO

Arabidopsis thaliana gene expression changes upon treatment with green peach aphid saliva

Project description:Myzus persicae (green peach aphid) feeding on Arabidopsis thaliana induces a defense response, quantified as reduced aphid progeny production, in infested leaves but not in other parts of the plant. Similarly, infiltration of aphid saliva into Arabidopsis leaves causes only a local increase in aphid resistance. Further characterization of the defense-eliciting salivary components indicates that Arabidopsis recognizes a proteinaceous elicitor with a size between 3 to 10 kD. Genetic analysis using well-characterized Arabidopsis mutant shows that saliva-induced resistance against M. persicae is independent of the known defense signaling pathways involving salicylic acid, jasmonate, and ethylene. Among 78 Arabidopsis genes that were induced by aphid saliva infiltration, 52 had been identified previously as aphid-induced, but few are responsive to the well-known plant defense signaling molecules salicylic acid and jasmonate. Quantitative PCR analysis confirms expression of saliva-induced genes. In particular, expression of a set of O-methyltransferases, which may be involved in the synthesis of aphid-repellent glucosinolates, was significantly up-regulated by both M. persicae feeding and treatment with aphid saliva. However, this did not correlate with increased production of 4-methoxyindol-3-ylmethylglucosinolate, suggesting that aphid salivary components trigger an Arabidopsis defense response that is independent of this aphid-deterrent glucosinolate.

2009-06-10 | GSE16497 | GEO

Phenotypic plasticity in the pea aphid Acyrthosiphon pisum: miRNA expression

Project description:We developed high throughput Solexa sequencing and bioinformatic analyses of the genome of the pea aphid Acyrthosiphon pisum in order to identify the first miRNAs from a hemipteran insect. By combining these methods we identified 155 miRNAs including 56 conserved and 99 new miRNAs. Moreover, we investigated the regulation of these miRNAs in different alternative morphs of the pea aphid by analysing the expression of miRNAs across the switch of reproduction mode.

2010-03-01 | GSE20106 | GEO

Pea aphid parthenogenetic development

Project description:Transcription profiling of pea aphid embryos developmental stages and of early larval 1 stage

2012-06-30 | E-MTAB-796 | biostudies-arrayexpress

Phenotypic plasticity in the pea aphid Acyrthosiphon pisum: miRNA expression

2010-05-06 | E-GEOD-20106 | biostudies-arrayexpress

Gene expression profiling of 5 pea aphid morphs

Project description:Purpose: Identify differentially expressed genes between 5 pea aphid morphs Methods: Collected whole bodies of 30 adult aphids of each of the five pea morphs and three clones (total of 15 samples)

2014-06-04 | GSE56830 | GEO

Arabidopsis thaliana gene expression changes upon treatment with green peach aphid saliva

2009-06-23 | E-GEOD-16497 | biostudies-arrayexpress

Gene expression profiling of 5 pea aphid morphs

2014-06-04 | E-GEOD-56830 | biostudies-arrayexpress