Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Oxic and anoxic plastic biodegradation potentials in sediments from Pearl River Estuary

PROVIDER: PRJNA1182859 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR31286542_1.fastq.gz	Fastqsanger.gz
	SRR31286542_2.fastq.gz	Fastqsanger.gz
	SRR31286543_1.fastq.gz	Fastqsanger.gz
	SRR31286543_2.fastq.gz	Fastqsanger.gz
	SRR31286544_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 108

Similar Datasets

Project description:Oxic-anoxic-oxic estuary Metatranscriptome

| PRJNA940127 | ENA

aquatic metagenome

Project description:Oxic-anoxic-oxic estuary Metagenome

| PRJNA222777 | ENA

Frequency of change determines effectiveness of microbial response strategies in sulfidic stream microbiomes

Project description:Chemostat incubations were established and inoculated with sediments collected from Canyon Creek, Calgary, Alberta, Canada. The chemostats experienced oxic-anoxic change of different frequency, High-frequency, Medium-frequency and Low-frequency. 18 samples were collected at the end of the final oxic phase and the final anoxic phase in the triplicated chemostats for metagenomic and metaproteomic analysis. 26 genomes were assembled from metagenomes. Proteomes were used to investigate translational regulation of each population associated with a genome.

2023-04-26 | PXD028583 | Pride

Metaproteomics of plastic biofilms in marine environments

Project description:To characterize the taxonomic and functional diversity of biofilms on plastics in marine environments, plastic pellets (PE and PS, ø 3mm) and wooden pellets (as organic control) were incubated at three stations: at the Baltic Sea coast in Heiligendamm (coast), in a dead branch of the river Warnow in Warnemünde (inlet), and in the Warnow estuary (estuary). After two weeks of incubation, all pellets were frozen for subsequent metagenome sequencing and metaproteomic analysis. Biofilm communities in the samples were compared on multiple levels: a) between the two plastic materials, b) between the individual incubation sites, and c) between the plastic materials and the wooden control. Using a semiquantitative approach, we established metaproteome profiles, which reflect the dominant taxonomic groups as well as abundant metabolic functions in the respective samples.

2021-11-01 | PXD012062 | Pride

Diurnally synchronized transitions between oxic and anoxic physiologies in an archaeon

Project description:This SuperSeries is composed of the following subset Series: GSE15272: Diurnally synchronized transitions between oxic and anoxic physiologies in an archaeon, experiment "A" GSE15273: Diurnally synchronized transitions between oxic and anoxic physiologies in an archaeon, experiment "B" GSE15274: Diurnally synchronized transitions between oxic and anoxic physiologies in an archaeon, experiment "Control-1" GSE15275: Diurnally synchronized transitions between oxic and anoxic physiologies in an archaeon, experiment "C" GSE15276: Diurnally synchronized transitions between oxic and anoxic physiologies in an archaeon, experiment "Control-2" Refer to individual Series

2009-04-14 | E-GEOD-15282 | biostudies-arrayexpress

Project description:Metagenome in the Pearl River Estuary sediments

| PRJNA958616 | ENA

sediment metagenome

Project description:Pearl River Estuary sediments Targeted Locus (Loci)

| PRJNA237100 | ENA

Dual oxic-anoxic co-culture enables direct study of host-anaerobe interactions at the airway epithelial interface

Project description:To understand the physiological response of Calu-3 cells to dual oxic-anoxic culture

2022-11-19 | GSE218124 | GEO

Comparison of microbial communities with different carbon source types

Project description:We reported the microbial communities in the biofilm anoxic-oxic-MBR system operated with different carbon source types.

2019-10-19 | GSE139113 | GEO

RNA expression data from Halobacterium NRC-1 in response to oxic/anoxic transitions, verification experiment

Project description:In order to ensure the reproducibility of the transcriptional response of Halobacterium NRC-1 to oxic/anoxic transitions, we repeated global mRNA measurements for the oxygen time series data in GSE5924, except that cultures were equilibrated to high oxygen for 12 hours prior to the start of the experiment rather than low oxygen. The results of these data suggest that there is good (~60%) reproducibility between datasets, and that Halobacterium responds robustly to oxic/anoxic transitions. Keywords: time series

2007-07-31 | GSE5925 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data