Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Mechanism Study on Selenium Enrichment in Mycelium, Primordium, and Fruiting Body Stages of Selenium-Enriched Lentinula edodes

PROVIDER: PRJNA1193309 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR31581402_1.fastq.gz	Fastqsanger.gz
	SRR31581402_2.fastq.gz	Fastqsanger.gz
	SRR31581403_1.fastq.gz	Fastqsanger.gz
	SRR31581403_2.fastq.gz	Fastqsanger.gz
	SRR31581404_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 54

Similar Datasets

5'-Serial Analysis of Gene Expression of the transcriptomes of Coprinopsis cinerea during fruiting body initiation

Project description:Large scale assessment of the transcriptomes of the vegetative mycelium and primordium will facilitate the generation of a more comprehensive picture of the fruiting process in basidiomycetes. We coupled 5'-Serial Analysis of Gene Expression (5'-SAGE) to high-throughput pyrosequencing from 454 Life Sciences to analyze the transcriptomes and identify up-regulated genes (URGs) among vegetative mycelium (Myc) and stage 1 primordium (S1-Pri) of Coprinopsis cinerea during fruiting body development. We evaluated the expression of >3,000 genes in the two respective growth stages and demonstrated that almost one-third of these genes were preferentially expressed in either stage, which implicated a significant transcriptomic switch during fruiting body initiation. We annotated >34,000 and >45,000 transcription start sites (TSSs) in the transcriptomes of Myc and S1-Pri respectively. We identified a wealth of potential URGs related to early fruiting events, although their functions and roles are not exactly known. This study serves to advance our understanding of the molecular mechanisms of fruiting body development in the model mushroom C. cinerea. 5'-SAGE analysis of the transcriptomes of vegetative mycelium and primordium of C. cinerea by 454 GS20 high-throughput pyrosequencer

2013-01-10 | E-GEOD-40722 | biostudies-arrayexpress

5'-Serial Analysis of Gene Expression of the transcriptomes of Coprinopsis cinerea during fruiting body initiation

2013-01-10 | GSE40722 | GEO

Development stages of Lentinula edodes

Project description:Gene expression profiles at different development stages and different growth medium of Lentinula edodes (L54) are comparied. Keywords: time-course

2005-01-20 | GSE2167 | GEO

Development stages of Lentinula edodes

Project description:Gene expression profiles at different development stages and different growth medium of Lentinula edodes (L54) are comparied. Keywords: time-course

2005-01-19 | E-GEOD-2167 | biostudies-arrayexpress

Transcriptomes of Pleurotus ostreatus in four different development stages (mycelium, primordium, young fruit body, mature fruit body)

Project description:To elucidate the mechanisms of fruit body development in Pleurotus ostreatus, the transcriptomes of four different development stages including mycelium, primordium, young fruit body, and mature fruit body were obtained by RNA-seq.

2018-04-12 | GSE113026 | GEO

Spore formation of Lentinula edodes

Project description:Gene expression profiles before and after spore formation of Lentinula edodes (L54)grown at sawdust. Keywords: time-course SAGE were used to generate tags from RNA of fruit bodies of L. edodes. RNA were extracted from the fruit bodies before and after spore observed. Gene expression profiles of both stages were compared to screen out genes may relate to spore formation.

2006-02-08 | E-GEOD-4202 | biostudies-arrayexpress

Using Multi-Omics Integration to explore differences in the three key developmental stages of Thelephora ganbajun Zang

Project description:In this study our research group has completed the metabolome sequencing of Thelephora ganbajun Zang in three key developmental stages, including mycelium, primordium and fruiting body, aiming to explore the specific substances or special mechanisms that may affect the development of ectomycorrhiza of strain 46 in its entire life history indifferent developmental stages, and to conduct dynamic real-time monitoring of the gene expression products

2023-12-18 | PXD047922 |

Project description:Transcriptomics analysis of selenium-enriched Lentinus edodes fruiting body

| PRJNA673769 | ENA

Spore formation of Lentinula edodes (LongSAGE)

Project description:Gene expression profiles before and after spore formation of Lentinula edodes (L54) grown at sawdust.

2010-11-24 | GSE25463 | GEO

Comparative proteome analyses of Ophiocordyceps sinensis at different stages

Project description:In this study, using an iTRAQ quantitative approach coupled with LC-MS/MS and bioinformatics, the proteomes were analyzed for the major three stages covering the fruiting body developmental process, including sclerotium (ST), primordium (PR) and mature fruiting body (MF), with a focus on fruiting body development-related proteins and its underlying mechanisms.

2020-09-01 | PXD021260 |

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data