Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Screen of LmMYB111 targets by DNA-affinity purification sequencing (DAP-Seq)

PROVIDER: PRJNA1194295 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SRR31613609_1.fastq.gz	Fastqsanger.gz
	SRR31613609_2.fastq.gz	Fastqsanger.gz
	SRR31613610_1.fastq.gz	Fastqsanger.gz
	SRR31613610_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 5

Similar Datasets

Project description:Screen of ZaNAC25 targets by DNA-affinity purification sequencing (DAP-Seq)

| PRJNA1209714 | ENA

Transcription factor OsWRKY11 induces rice heading at low concentrations but inhibits rice heading at high concentrations

Project description:To identify direct targets of OsWRKY11, we performed DNA affinity purification sequencing (DAP-seq).

2025-05-04 | GSE266156 | GEO

DNA affinity purification sequencing (DAP-seq) data of LEAFY (LFY)

Project description:In this study, we use DNA affinity purification sequencing to identiy genome-wide binding of LFY transcription factor, a master regulator of flower development in Arabidopsis. We generated two sets of data, one using genomic DNA from plant tissue, thus retain DNA methylation, as probe for DNA affinity purification (DAP-seq dataset), and the other using PCR amplified genomic DNA (without DNA methylation; AmpDAP-seq dataset).

2021-03-25 | GSE160013 | GEO

Deciphering the regulatory network of the NAC transcription factor FvRIF, a master regulator in controlling strawberry fruit ripening [DAP-seq]

Project description:To better understand FvRIF-mediated transcriptional regulation of fruit ripening, we performed DNA affinity purification sequencing (DAP-seq) to unravel FvRIF binding sites at the genome level. For DAP-seq analysis, the recombinant FvRIF fusion protein was used to purify the sheared genomic DNA of strawberry fruits. Two independent biological replicates of DAP-seq and DNA ‘input’ negative control libraries were prepared and submitted for deep sequencing.

2023-11-08 | GSE220785 | GEO

Identifying transcription factor-DNA interactions using machine learning

Project description:We focused on building models that incorporated transcription factor (TF)-DNA interaction data for 12 members of the Auxin Response Factor (ARF) family from soybean as assessed by DNA Affinity Purification and sequencing (DAP-seq).

2023-06-01 | GSE193400 | GEO

DAP-seq reveals FvSEP3 directly targets downstream genes relevant to strawberry fruit ripening

Project description:To better understand FvSEP3-mediated transcriptional regulation of fruit ripening, we performed DNA affinity purification sequencing (DAP-seq) to uncover FvSEP3 directly binding sites at the genome level. For DAP-seq analysis, the recombinant FvSEP3 fusion protein was used to purify the sheared genomic DNA of strawberry fruits. Two independent biological replicates of DAP-seq and DNA 'input' negative control libraries were prepared and submitted for deep sequencing.

2024-11-05 | GSE260824 | GEO

Project description:DNA Affinity Purification (DAP) Sequencing Method Development

| PRJNA758434 | ENA

Arabidopsis thaliana

Project description:The DNA affinity purification DAP-Seq assay [ChIP-seq]

| PRJNA257558 | ENA

DNA affinity purification sequencing (DAP-seq) data of LEAFY (LFY)

Project description:DNA affinity purification sequencing (DAP-seq) data of LEAFY (LFY)

| PRJNA671605 | ENA

Transcription factor binding divergence across maize inbred lines drives transcriptional and phenotypic variation

Project description:We use DNA affinity purification-sequencing (DAP-seq) to map transcription factor binding events for 200 maize TFs belonging to 30 distinct families and heterodimer pairs in two distinct inbred lines historically used for maize hybrid plant production

2025-05-05 | GSE275897 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data