Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

RNA sequencing data of mouse intestinal epithelial cells following different dietary treatments and Trichuris muris infection

ABSTRACT: RNA sequencing data of mouse intestinal epithelial cells following different dietary treatments and Trichuris muris infection

PROVIDER: PRJNA1197498 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR31700359_1.fastq.gz	Fastqsanger.gz
	SRR31700359_2.fastq.gz	Fastqsanger.gz
	SRR31700360_1.fastq.gz	Fastqsanger.gz
	SRR31700360_2.fastq.gz	Fastqsanger.gz
	SRR31700361_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 40

Similar Datasets

RNA sequencing data of mouse intestinal epithelial cells following different dietary treatments and Trichuris muris infection

Project description:Mice were fed either a synthetic control diet or an inulin-enriched diet for 14 days prior to infection. Half of the mice in each dietary group were infected with 300 T. muris eggs, and euthanised 72 hours post-infection.

2025-02-01 | GSE284172 | GEO

Trichuris muris

Project description:Trichuris muris overview

| PRJNA305065 | ENA

Extracellular vesicles Trichuris muris

Project description:We analysed the exosomes secreted by the nematode Trichuris muris. Two replicates of exosomes were analysed using a 5600+ mass spectrometer

2017-12-13 | PXD008387 | Pride

Trichuris muris transcriptomics

Project description:Trichuris muris is very closely related to the human parasite T. trichiura sharing cross reactive antigens. Moreover, it is a remarkably tractable model system for dissecting immune responses and host parasite relationships and is actively being investigated in a number of laboratories worldwide. T. muris is a naturally occurring nematode parasite of mice which resides in the caecum and colon and has a direct oral faecal life cycle. High-throughput sequencing of Trichuris muris transcriptome for de novo assembly of transcripts. The main objective of this project is to recognize genes expressed in given life stages. This data is part of a pre-publication release. For information on the proper use of pre-publication data shared by the Wellcome Trust Sanger Institute (including details of any publication moratoria), please see http://www.sanger.ac.uk/datasharing/

2013-05-28 | E-ERAD-125 | biostudies-arrayexpress

mRNA data from extracellular vesicles secreted by Trichuris muris

Project description:RNA-Seq analysis of the mRNA present in the extracellular vesicles secreted by the nematode Trichuris muris

2017-12-13 | GSE107986 | GEO

miRNA data from extracellular vesicles secreted by Trichuris muris

Project description:miRNA-Seq analysis of the miRNA present in the extracellular vesicles secreted by the nematode Trichuris muris

2017-12-13 | GSE107985 | GEO

Extracellular vesicles from Heligmosomoides bakeri and Trichuris muris contain distinct small RNAs

Project description:We report the small RNA content of extracellular vesicles (EVs) from adult parasite Trichuris muris and Heligmosomoides bakeri

2020-08-01 | GSE152591 | GEO

RNA sequencing data of mouse caecum tissue following different dietary treatments

Project description:Mice were fed either a semi-synthetic diet ('SSD'), or the same diet supplemented with the fiber inulin ('inulin'). Mice were then infected with Trichuris muris ('Tm').

2025-06-06 | GSE281400 | GEO

Effect of B cell-intrinsic deletion of MLL1 on gene expression of germinal centre B cells during day 13 Trichuris muris infection

Project description:We measured the gene expression differences in germinal centre B cells from day 13 Trichuris muris-infected mice in which MLL1 is conditionally deleted in mature B cells

2024-07-31 | GSE237391 | GEO

Transcriptional response of the mouse intestinal mucosa to infection by the parasitic nematode Trichuris muris

Project description:This data is part of a pre-publication release. For information on the proper use of pre-publication data shared by the Wellcome Trust Sanger Institute (including details of any publication moratoria), please see http://www.sanger.ac.uk/datasharing/ The human-infective whipworm Trichuris trichiura is estimated to infect up to a billion people and is responsible for considerable morbidity, especially in children of developing countries. The closely related species T. muris is a naturally occurring nematode parasite of mice that serves as a remarkably tractable model system for dissecting immune responses and host-parasite relationships. Such studies are of relevance beyond parasitology as helminths have arguably had a significant impact on the evolution of the mammalian immune system. Both Trichuris species reside in the caecum and colon of the host where they burrow their front end for feeding into the intestinal mucosa, thereby breaching the mucus barrier and allowing access of the microflora directly to the epithelium. The interplay of intestinal helminths, the bacterial microflora and the host immune system is currently a research focus in various laboratories (Bancroft et al 2012). This study will study the transcriptional responses of the intestinal mucosa (caecum) from infected and uninfected mice.

2013-05-07 | E-ERAD-181 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data