Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

H3K9me2 CUT&Tag analysis to examine the effect of Jmjd1a knockdown in 3T3-L1 pre-adipocyte cells

ABSTRACT: H3K9me2 CUT&Tag analysis to examine the effect of Jmjd1a knockdown in 3T3-L1 pre-adipocyte cells

PROVIDER: PRJNA1199336 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR31749347_1.fastq.gz	Fastqsanger.gz
	SRR31749347_2.fastq.gz	Fastqsanger.gz
	SRR31749348_1.fastq.gz	Fastqsanger.gz
	SRR31749348_2.fastq.gz	Fastqsanger.gz
	SRR31749349_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 18

Similar Datasets

H3K9me2 CUT&Tag analysis to examine the effect of Jmjd1a knockdown in 3T3-L1 pre-adipocyte cells

Project description:Adipocyte differentiation has been shown to require iron, but the underlying mechanism remains unclear. We have previously reported that iron supply through ferritinophagy is associated with demethylation of the repressive histone mark H3K9me2 in the differentiation-associated genes, which is mediated by the histone demethylase JMJD1A. To examine how JMJD1A regulates the gene expression program during adipocyte differentiation, in this study we peformed H3K9me2 CUT&Tag analysis using 3T3-L1 pre-adipocytes with Jmjd1a knockdown.

2025-04-29 | GSE284471 | GEO

RNA-seq analysis to examine the effect of Jmjd1a knockdown in 3T3-L1 pre-adipocyte cells

Project description:Adipocyte differentiation has been shown to require iron, but the underlying mechanism remains unclear. We have previously reported that iron supply through ferritinophagy is associated with demethylation of repressive histone marks in the differentiation-associated genes, which is mediated by the histone demethylase JMJD1A. To examine how JMJD1A regulates the gene expression program during adipocyte differentiation, in this study we peformed RNA-seq analysis using 3T3-L1 pre-adipocytes with Jmjd1a knockdown.

2025-04-29 | GSE269147 | GEO

RNA-seq analysis to examine the effect of Jmjd1a knockdown in 3T3-L1 pre-adipocyte cells

Project description:RNA-seq analysis to examine the effect of Jmjd1a knockdown in 3T3-L1 pre-adipocyte cells

| PRJNA1120408 | ENA

Transcription profiling of mouse 3T3-L1 adipocyte differentiation time series-3T3-L1 adipocyte differentiation timeseries

Project description:3T3-L1 adipocyte differentiation time series-3T3-L1 adipocyte differentiation timeseries. Hackl H*, Burkard T*, Sturn A, Rubio R, Schleiffer A, Tian S, Quackenbush J, Eisenhaber F, Trajanoski Z. Molecular processes during fat cell development revealed by gene expression profiling and functional annotation. Genome Biol. 2005. 6:R108.

2005-01-01 | E-MARS-2 | biostudies-arrayexpress

Comparative proteomic profiling of 3T3-L1 adipocyte differentiation using SILAC quantification

Project description:Comparative proteomic profiling of 3T3-L1 adipocyte differentiation using SILAC quantification

2020-10-26 | PXD019716 | Pride

Analyses to examine the effect of the iron chelator deferoxamine on 3T3-L1 pre-adipocyte cells

Project description:Analyses to examine the effect of the iron chelator deferoxamine on 3T3-L1 pre-adipocyte cells

| PRJNA728491 | ENA

Deep 3T3-L1 adipocyte proteome at 10 days post-differentiation

Project description:Here we conducted a comprehensive analysis of the proteome of the widely used 3T3-L1 murine adipocyte laboratory cell line at 10-days post-differentiation.

2023-02-13 | PXD039532 | Pride

Transcriptome analysis of adipocyte differentiation (3T3-L1 WT and MIGA2 perturbed/overexpressed)

Project description:RNA-Seq of 3T3-L1 WT and MIGA2 perturbed/overexpressed adipocyte differentiation

2020-01-01 | GSE135683 | GEO

Murine 3T3-L1 adipocytes vs. adipocyte-derived microvesicles (ADMs)

Project description:mRNA profiles of adipocyte-derived microvesicles (ADMs) and their donor 3T3-L1 adipoyctes (Day 11) were compared. ADMs included RNA without typical 28S and 18S ribosomal RNA.

2009-11-17 | GSE17973 | GEO

Transcription profiling of mouse 3T3-L1 adipocytes vs. adipocyte-derived microvesicles (ADMs)

Project description:mRNA profiles of adipocyte-derived microvesicles (ADMs) and their donor 3T3-L1 adipoyctes (Day 11) were compared. ADMs included RNA without typical 28S and 18S ribosomal RNA. Experiment Overall Design: ADMs vs. donor 3T3-L1 adipocytes. Biological replicates: 2 ADMs replicates, 2 donor cells.

2009-12-03 | E-GEOD-17973 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data