Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Identification of the differently expressed genes regualted by PD0325901 and Danofloxacin

ABSTRACT: Identification of the differently expressed genes regualted by PD0325901 and Danofloxacin

PROVIDER: PRJNA1208457 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR31940717_1.fastq.gz	Fastqsanger.gz
	SRR31940717_2.fastq.gz	Fastqsanger.gz
	SRR31940718_1.fastq.gz	Fastqsanger.gz
	SRR31940718_2.fastq.gz	Fastqsanger.gz
	SRR31940719_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 12

Similar Datasets

Identification of the differently expressed genes regualted by PD0325901 and Danofloxacin

Project description:Mouse embryonic stem cells (mESCs) treated by 1 μM PD0325901 and 10 μM Danofloxacin (named PDF) can matain undifferentiated state in vitro. To identify the differently expressed genes regulated by them, mESCs treated with PD0325901 (PD) and PDF for 12 h and 24 h were sent to do transcriptome sequencing. These results will extend our outstanding of the regulatory network of ESC pluripotency.

2025-01-13 | GSE286230 | GEO

Identification and analysis of differently expressed genes between 4T1 cells incubated with PBS and oxalate

Project description:Identification and analysis of differently expressed genes between 4T1 cells incubated with PBS and oxalate

| PRJNA699538 | ENA

Identification of differently expressed mRNAs in LNPPS overexpression bladder cancer cells

Project description:Identification of differently expressed mRNAs in LNPPS overexpression bladder cancer cells

| PRJNA788932 | ENA

Identification of differently expressed genes in Rainbow trout muscle under restricted feeding

2012-08-18 | GSE35966 | GEO

Analyse the differently expressed genes in tamoxifen resistant breast cancer cells

Project description:Analyse the differently expressed genes in tamoxifen resistant breast cancer cells

| PRJNA438585 | ENA

Identification of differently expressed genes in Rainbow trout muscle under restricted feeding

Project description:We identified that the adiponectin gene expression in rainbow trout muscle decreased by restrected feeding. In order to identify the genes differently expressed by the same treatment, micrarray analysis was conducted Fish were fed ad libitum once a week (RF, restricted feed group) or fed ad libitum twice per day (control). After 1 month, the muscle was desected from 4 individuals from each group.

2012-08-18 | E-GEOD-35966 | biostudies-arrayexpress

Identification and analysis of differently expressed genes in liver macrophages from WT and FABP7 KO mice with MC38 metastatic.

Project description:Identification and analysis of differently expressed genes in liver macrophages from WT and FABP7 KO mice with MC38 metastatic.

| PRJNA1021538 | ENA

Differently expressed genes of the heart from sham and 5/6 nephrectomy mice

Project description:Differently expressed genes of the heart from sham and 5/6 nephrectomy mice

| PRJNA598871 | ENA

Identification of differently expressed mRNAs in LNPPS overexpression bladder cancer cells

Project description:In this study, we aimed to explore RNAs profiling regulated by LNPPS in bladder cancer. RNA-seq analysis of three pairs of LNPPS-overexpressing 5637 cells and control cells was completed in this project. A total of 17.6Gb raw data was obtained. In concluion, our data showed that the overexpression of LNPPS caused the significantly upregulation of 82 mRNAs, and the downregulation of 102 mRNAs (|Log2FC|>1.5, p<0.05). Further studies will focus on the potential regulatory mechanisms of these significantly differently expressed mRNAs in the LNPPS-mediated development of bladder cancer.

2023-01-04 | GSE190917 | GEO

Identification of differently expressed genes in human colorectal adenocarcinoma.

Project description:AimTo investigate the differently expressed genes in human colorectal adenocarcinoma.MethodsThe integrated approach for gene expression profiling that couples suppression subtractive hybridization, high-throughput cDNA array, sequencing, bioinformatics analysis, and reverse transcriptase real-time quantitative polymerase chain reaction (PCR) was carried out. A set of cDNA clones including 1260 SSH inserts amplified by PCR was arrayed using robotic printing. The cDNA arrays were hybridized with fluorescent-labeled probes prepared from RNA of human colorectal adenocarcinoma (HCRAC) and normal colorectal tissues.ResultsA total of 86 genes were identified, 16 unknown genes and 70 known genes. The transcription factor Somult9 influencing cell differentiation was downregulated. At the same time, Heat shock protein 10 KDis downregulated and Calmoulin is up-regulated.ConclusionDownregulation of heat shock protein 10 KD lost its inhibition of Ras, and then attenuated the Ras GTPase signaling pathway, increased cell proliferation and inhibited cell apoptosis. Down-regulated transcription factor Somult9 influences cell differentiation and cell-specific gene expression. Down-regulated Somult9 also decreases its binding to calmodulin, accumulates calmodulin as receptor-activated kinase and phosphorylase kinase due to the activation of PhK.

| S-EPMC4087892 | biostudies-literature

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data