Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Fusarium chlamydosporum strain:IraGTOF6

ABSTRACT: Fusarium chlamydosporum genome sequencing, assembly, and annotation

PROVIDER: PRJNA1213090 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SRR32193853_1.fastq.gz	Fastqsanger.gz
	SRR32193854_1.fastq.gz	Fastqsanger.gz
	SRR32193854_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 4 of 4

Similar Datasets

Fusarium oxysporum strain:IraGTOF11

Project description:Fusarium oxysporum IraGTOF11 genome sequencing, assembly, and annotation

| PRJNA1222375 | ENA

Fusarium graminearum CML3066

Project description:Fusarium graminearum strain CML3066 genome and annotation

| PRJEB12819 | ENA

Fusarium

Project description:Fusarium Genome sequencing and assembly

| PRJNA677929 | ENA

The global fusarium graminearum gene expressional responses to different nitrogen source and the gene expression changes between histone methylation defective mutants and wild type strain

Project description:Purpose: To assess global changes of fusarium graminearum gene expressional responses to different nitrogen source and gene expression changes after removal different histone methylation hallmarks. Methods: For RNA seq of fusarium, three biological replicates of hyphae after 48/72 hours cultured were sequenced. Results: For each sample, 5.83-8.31G RNA-seq clean reads were obtained mapped to the Fusarium graminearum genome sequence.

2025-04-01 | GSE171288 | GEO

Discovery and Differential Expression of miRNAs in Fusarium Wilt Resistant and Susceptible Banana Varieties

Project description:MicroRNAs (miRNAs) are a class of endogenous non-coding small RNAs that regulate targeted mRNAs by degrading or repressing translation, considered as post-transcrption regulators. So far, a large number of miRNAs have been discovered in model plants, but little information is available on miRNAs in banana. In this study, by sequencing the small RNA (sRNA) transcriptomes of Fusarium wilt resistant and susceptible banana varieties, 139 members in 38 miRNA families were discovered, and six out of eight new miRNAs were confirmed by RT-PCR. According to the analysis of sRNA transcriptome data and qRT-PCR verification, some miRNAs were differentially expressed between Fusarium wilt resistant and susceptible banana varieties. Two hundred and ninety-nine and 31 target genes were predicted based on the draft maps of banana B genome and Fusarium oxysporum (FOC1, FOC4) genomes respectively. Specifically, two important pathogenic genes in Fusarium oxysporum genomes, feruloyl esterase gene and proline iminopeptidase gene, were targeted by banana miRNAs. These novel findings may provide a new strategy for the prevention and control of Fusarium wilt in banana.

2016-10-14 | GSE74005 | GEO

Fusarium metavorans strain:FSSC_6

Project description:Fusarium solani Genome sequencing and assembly

| PRJNA314357 | ENA

Fusarium

Project description:Fusarium fujikuroi Genome sequencing and assembly

| PRJNA565749 | ENA

Fusarium

Project description:Fusarium endophytes genome sequencing and assembly

| PRJNA761077 | ENA

Comparative O-glycoproteomics of Fusarium oxysporum

Project description:Fusarium oxysporum causes Fusarium wilt syndrome in more than 120 different plant hosts, including globally important crops such as tomato, cotton, banana, melon, etc. F. oxysporum shows high host specificity in over 150 formae speciales and have been ranked in the top 10 plant fungal pathogens. Although three PMTs encoded by the pmt1, pmt2, and pmt4 are annotated in the genome of F. oxysporum, their functions have not been reported. As O-mannosylation is not found in plants, a comprehensive understanding of PMTs in F. oxysporum becomes attractive for the development of new strategy against Fusarium wilt. In order to understand the molecular mechanism of the differential functions of three PMTs, a comparative O-glycoproteome analysis of the pmt mutants were carried out.

2019-10-28 | PXD012530 | Pride

Fusarium oxysporum strain:BS26

Project description:Fusarium oxysporum BS26 Genome sequencing and assembly

| PRJNA814460 | ENA