Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Crocodylus

ABSTRACT: Novel island species elucidate a species complex of Neotropical Crocodiles

PROVIDER: PRJNA1227509 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR32626419_1.fastq.gz	Fastqsanger.gz
	SRR32626419_2.fastq.gz	Fastqsanger.gz
	SRR32626420_1.fastq.gz	Fastqsanger.gz
	SRR32626420_2.fastq.gz	Fastqsanger.gz
	SRR32626421_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 152

Similar Datasets

Identification and comparison of miRNAs involved in cotton fiber elongation between sea-island and upland cotton

Project description:To identify potential miRNAs involved in fiber development and elucidate their expression differences between G. barbadense and G. hirsutum, we constructed two small RNA libraries, Gb10 and Gh10, prepared from fibers of 3-79 (G. barbadense) and TM-1 (G. hirsutum) collected at 10 days post-anthesis (DPA). We identified 28 conserved miRNA families, including 24 that exactly match known plant miRNA families in miRBase. With MIREAP and newly developed software miRsearcher, 7 candidate-novel miRNAs were found. 5 candidate-novel miRNAs were expressed in both species, 2 candidate-novel miRNAs were expressed only in one species. Moreover, 4 miRNA families showed significant expression differences between sea-island cotton and upland cotton in 10 DPA fibers.

2010-12-03 | GSE25773 | GEO

Identification and comparison of miRNAs involved in cotton fiber elongation between sea-island and upland cotton

2010-12-03 | E-GEOD-25773 | biostudies-arrayexpress

Hormones, Genes, and Athleticism: Effect of Androgens on the Avian Muscular Transcriptome

Project description:Male vertebrate social displays vary from physically simple to complex, with the latter involving exquisite motor command of the body and appendages. Studies of these displays have, in turn, provided substantial insight into neuromotor mechanisms. The neotropical golden-collared manakin (Manacus vitellinus) has been used previously as a model to investigate intricate motor skills because adult males of this species perform an acrobatic and androgen-dependent courtship display. To support this behavior, these birds express elevated levels of androgen receptors (AR) in their skeletal muscles. Here we use RNA sequencing to explore how testosterone (T) modulates the muscular transcriptome to support male manakin courtship displays. In addition, we explore how androgens influence gene expression in the muscles of the zebra finch (Taenopygia guttata), a model passerine bird with a limited courtship display and minimal muscle AR. We identify androgen-dependent, muscle-specific gene regulation in both species. In addition, we identify manakin-specific effects that are linked to muscle use during the manakin display, including androgenic regulation of genes associated with muscle fiber contractility, cellular homeostasis, and energetic efficiency. Overall, our results point to numerous genes and gene networks impacted by androgens in male birds, including some that underlie optimal muscle function necessary for performing acrobatic display routines. Manakins are excellent models to explore gene regulation promoting athletic ability. Compare gene expression profiles between two species in the absence of testosterone or in the presence of testosterone using RNA-Seq (Illumina platform: Hi-Seq 2000)

2016-03-30 | E-GEOD-73660 | biostudies-arrayexpress

Mycoplasma crocodyli MP145

Project description:Isolated from crocodiles

| PRJNA29021 | ENA

Whole-genome sequencing of novel Burkholderia cepacia complex species: Burkholderia mycopellens and Burkholderia crassaminum

Project description:Whole-genome sequencing of novel Burkholderia cepacia complex species

| PRJEB76175 | ENA

Burkholderia species

Project description:Novel Burkholderia cepacia complex species-Genome sequencing and assembly

| PRJNA391085 | ENA

Total RNA sequencing of the liver tissues of Oreochromis niloticus (Nile Tilapia) and of Pundamilia nyerei

Project description:Cichlids fishes exhibit extensive phenotypic diversification and speciation. In this study we integrate transcriptomic and proteomic signatures from two cichlids species, identify novel open reading frames (nORFs) and perform evolutionary analysis on these nORF regions. We embark comparative transrcriptomics and proteogenomic analysis of two metabolically active tissues, the testes and liver, of two cichlid species Oreochromis niloticus (Nile tilapia, ON) and Pundamilia nyererei (Makobe Island, PN). Our results suggest that the time scale of speciation of the two species can be better explained by the evolutionary divergence of these nORF genomic regions.

2021-05-17 | GSE150744 | GEO

Venom evolution of 15 neotropical ants

Project description:To comprehend the drivers underlying venom variation in ants, we selected 15 Neotropical species and recorded a range of traits, including ecology, morphology, and venom bioactivity. Principal component analysis of both morphological and venom bioactivity traits revealed that stinging ants display two functional strategies. Additionally, phylogenetic comparative analysis indicated that venom function (predatory, defensive, or both) and mandible morphology significantly correlate with venom bioactivity and amount, while pain-inducing activity trades off with insect paralysis. Further analysis of the venom biochemistry of the 15 species revealed switches between cytotoxic and neurotoxic venom compositions in some species. This study highlights the fact that ant venoms are not homogenous, and for some species, there are major shifts in venom composition associated with the diversification of venom ecological functions.

2024-10-16 | PXD050348 | Pride

Echinococcus oligarthrus genome

Project description:Whole genome sequencing of neotropical species Echinococcus oligarthrus

| PRJEB37907 | ENA

Crocodylus porosus

Project description:Crocodylus porosus overview

| PRJNA163583 | ENA