Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Resolving Taxonomic Uncertainties in Ailiid Catfishes (Siluriformes: Ailiidae) Using Genome-Scale Data

PROVIDER: PRJNA1230789 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR32611000_1.fastq.gz	Fastqsanger.gz
	SRR32611000_2.fastq.gz	Fastqsanger.gz
	SRR32611001_1.fastq.gz	Fastqsanger.gz
	SRR32611001_2.fastq.gz	Fastqsanger.gz
	SRR32611002_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 62

Similar Datasets

Project description:Phylogenomics of bumblebee catfishes of the family Pseudopimelodidae using ultraconserved elements (Teleostei: Siluriformes)

| PRJNA724721 | ENA

Project description:Phylogenomic analysis of trichomycterids catfishes (Teleostei: Siluriformes) inferred from ultra conserved elements

| PRJNA530617 | ENA

E-GEOD-100100

Project description:A data mining paradigm for identifying key factors in biological processes using gene expression data

2020-04-01 | E-GEOD-100100 | ExpressionAtlas

E-PROT-57

Project description:The Mount Sinai cohort of large-scale proteomic data in Alzheimer's disease

2021-05-20 | E-PROT-57 | ExpressionAtlas

E-GEOD-27855

Project description:Genome wide expression analysis of EST-induced EBE-XVE using Affymetrix ATH1 array

2015-12-07 | E-GEOD-27855 | ExpressionAtlas

E-MTAB-3711

Project description:Identification of chicken Interferon Stimulated Genes (ISGs) using Affymetrix GeneChip Chicken Genome Arrays

2015-07-14 | E-MTAB-3711 | ExpressionAtlas

E-GEOD-49975

Project description:Integrative analysis of histone ChIP-seq and gene expression microarray data using Bayesian mixture models

2015-07-27 | E-GEOD-49975 | ExpressionAtlas

Unlock the mystery of the hard-to-sequence phage genome: discovering a novel mechanism of bacterial immunity

Project description:Whole-genome sequencing is an important way to understand the genetic information, gene function, biological characteristics, and living mechanisms of organisms. There is no difficulty to have mega-level genomes sequenced at present. However, we encountered a hard-to-sequence genome of Pseudomonas aeruginosa phage PaP1. The shotgun sequencing method failed to dissect this genome. After insisting for 10 years and going over 3 generations of sequencing techniques, we successfully dissected the PaP1 genome with 91,715 bp in length. Single-molecule sequencing revealed that this genome contains lots of modified bases, including 51 N6-methyladenines (m6A) and 152 N4-methylcytosines (m4C). At the same time, further investigations revealed a novel immune mechanism of bacteria, by which the host bacteria can recognize and repel the modified bases containing inserts in large scale, and this led to the failure of the shotgun method in PaP1 genome sequencing. Strategy of resolving this problem is use of non-library dependent sequencing techniques or use of the nfi- mutant of E. coli DH5M-NM-1 as the host bacteria to construct the shotgun library. In conclusion, we unlock the mystery of phage PaP1 genome hard to be sequenced, and discover a new mechanism of bacterial immunity in present study. Methylation profiling of Pseudomonas aeruginosa phage PaP1 using kinetic data generated by single-molecule, real-time (SMRT) sequencing on the PacBio RS.

2013-08-22 | E-GEOD-50100 | biostudies-arrayexpress

E-GEOD-46515

Project description:Expression data from mouse model using targeted deletion of hepatic RICTOR (Albumin-Cre Rictor LoxP/LoxP)

2015-07-13 | E-GEOD-46515 | ExpressionAtlas

E-MTAB-7276

Project description:Gene expression profiling of Fowlpox knock-out mutant viruses using Affymetrix GeneChip Chicken Genome Arrays

2018-10-10 | E-MTAB-7276 | ExpressionAtlas