Project description:This is a collection of diverse publicly available macrophage datasets. The datasets belong to three different platforms and all normalized together using modified CDF files.

2019-07-16 | GSE134312 | GEO

A collection of annotated and harmonized human breast cancer transcriptome datasets, including immunologic classification.

Project description:The increased application of high-throughput approaches in translational research has expanded the number of publicly available data repositories. Gathering additional valuable information contained in the datasets represents a crucial opportunity in the biomedical field. To facilitate and stimulate utilization of these datasets, we have recently developed an interactive data browsing and visualization web application, the Gene Expression Browser (GXB). In this note, we describe a curated compendium of 13 public datasets on human breast cancer, representing a total of 2142 transcriptome profiles. We classified the samples according to different immune based classification systems and integrated this information into the datasets. Annotated and harmonized datasets were uploaded to GXB. Study samples were categorized in different groups based on their immunologic tumor response profiles, intrinsic molecular subtypes and multiple clinical parameters. Ranked gene lists were generated based on relevant group comparisons. In this data note, we demonstrate the utility of GXB to evaluate the expression of a gene of interest, find differential gene expression between groups and investigate potential associations between variables with a specific focus on immunologic classification in breast cancer. This interactive resource is publicly available online at: http://breastcancer.gxbsidra.org/dm3/geneBrowser/list.

| S-EPMC5820610 | biostudies-literature

Pooled mouse macrophage datasets from GEO

Project description:This is a collection of diverse publicly available mouse macrophage datasets and is also a subset of GSE119085. The datasets belong to GPL1261 platform and all normalized together with samples from GSE119085.

2019-08-03 | GSE135324 | GEO

Rapid Acceleration of Diagnostics - Radical (RADx-rad) Collection of General Research Use Datasets

Project description:Rapid Acceleration of Diagnostics - Radical (RADx-rad) Collection of General Research Use Datasets

| PRJNA1183456 | ENA

Rapid Acceleration of Diagnostics - Radical (RADx-rad) Collection of General Research Use Datasets

Project description:Rapid Acceleration of Diagnostics - Radical (RADx-rad) Collection of General Research Use Datasets

| PRJNA1183457 | ENA

Rapid Acceleration of Diagnostics - Tech Program (RADx-Tech) Collection of General Research Use Datasets

Project description:Rapid Acceleration of Diagnostics - Tech Program (RADx-Tech) Collection of General Research Use Datasets

| PRJNA1183450 | ENA

Rapid Acceleration of Diagnostics - Tech Program (RADx-Tech) Collection of General Research Use Datasets

Project description:Rapid Acceleration of Diagnostics - Tech Program (RADx-Tech) Collection of General Research Use Datasets