Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Gene expression in two Hawaiian honeycreeper populations

PROVIDER: PRJNA1248578 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR33050400_1.fastq.gz	Fastqsanger.gz
	SRR33050400_2.fastq.gz	Fastqsanger.gz
	SRR33050401_1.fastq.gz	Fastqsanger.gz
	SRR33050401_2.fastq.gz	Fastqsanger.gz
	SRR33050402_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 78

Similar Datasets

Chlorodrepanis virens strain:Hawaii Amakihi

Project description:Hawaiian Honeycreeper Genome Sequencing

| PRJNA252695 | ENA

Project description:Hawaiian honeycreeper gut microbiome

| PRJNA742066 | ENA

Hawaiian honeycreepers (Drepanidini)

Project description:Phylogenomics of the Hawaiian Honeycreeper Radiation

| PRJNA944998 | ENA

Hawaiian picture wing Drosophila sproati exhibit adaptive population divergence along a narrow climatic gradient on Hawaii Island

Project description:D. grimshawi microarray used to text for gene expression differences between two populations subjected to control or low-intensity heat for one week during maturation Anthropogenic influences on global processes and climatic conditions are increasingly affecting ecosystems throughout the world. Hawaii Island’s native ecosystems are well-studied and local long-term climatic trends well-documented, making these ecosystems ideal for evaluating how native taxa may respond to a warming environment. This study documents adaptive divergence of populations of a Hawaiian picture wing Drosophila, D. sproati, that are separated by only 7km and 365m in elevation. Representative laboratory populations show divergent behavioral and physiological responses to an experimental low-intensity increase in ambient temperature during maturation. The significant interaction of source population by temperature treatment for behavioral and physiological measurements indicates differential adaptation to temperature for the two populations. Significant differences in gene expression among males were mostly explained by the source population, with eleven genes in males also showing a significant interaction of source population by temperature treatment. The combined behavior, physiology, and gene expression differences between populations illustrates the potential for local adaptation to occur over a fine spatial scale and exemplifies nuanced response to climate change.

2018-11-27 | GSE122959 | GEO

The evolution of expression divergence in wild C. elegans

Project description:To examine the ways in which gene expression varies in natural populations and its relationship to genetic divergence, we estimated allele-specific expression in the offspring of multiple wild C. elegans strains crossed with the laboratory reference strain N2. Allele-specific expression analyses are uniquely sensitively able to identify cis regulatory changes, and coupled with analyses of differential expression between parental strains and parents and offspring can determine the regulatory pattern and inheritance mode of gene expression across the genome. We chose 7 strains that represented a range of divergence from N2 and spanned the species tree to cross with N2: EG4348; DL238; CB4856 (the classical ‘Hawaiian’ strain); ECA722; QX1211; and ECA701 and XZ1516 (two extremely diverged strains). This study sheds light on the relationship of genetic and expression divergence, the global patterns of inheritance and regulatory mode of genes in C. elegans, and the factors that differentiate genes with expression divergence from those with stabler expression.

2024-10-14 | GSE272616 | GEO

Mus musculus

Project description:Gene expression data from two murine tracheal cell populations

| PRJNA138845 | ENA

Project description:The Role of Geography, Diet, and Host Phylogeny on the Gut Microbiome in the Hawaiian Honeycreeper Radiation

| PRJNA1135247 | ENA

Gasterosteus aculeatus

Project description:Convergent evolution of gene expression in two high-toothed stickleback populations

| PRJNA451197 | ENA

Sex-biased gene expression in two Daphnia galeata clones from different populations

Project description:Sex-biased gene expression in two Daphnia galeata clones from different populations

| PRJEB14954 | ENA

Biomarks of Resistance to Cetuximab in Colorectal Cancer

Project description:Interventions: A group:Before using cetuximab;B group:After progression of disease:no Primary outcome(s): KRAS gene sequence;NRAS gene sequence;BRAF gene sequence;PIK3CA gene sequence;EGFR gene sequence;EGFR gene copy numbers;EGFR expression;Her2 expression;c-Met expression;PTEN expression Study Design: historical control

| 2671639 | ecrin-mdr-crc

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data