Project description:Mining candidate genes for abnormal red body color traits of cultured Yellow River Carp(Cyprinus carpio haematopterus) based on BSA whole genome resequencing
Project description:In order to explore the regulatory information of the two different color associations in crucian carp, we identified the differential miRNAs of gold and greenish grey by smallRNA sequencing, and analyzed their functional and pathway enrichment.
Project description:the current study paints a thorough transcriptome profiles of different skin color groups (white, yellow and brown) in celestial goldfish, and several candidate genes were selected as important functional genes involved in the color variation
Project description:In order to explore the regulatory information of the two different color associations in crucian carp, we identified the differential mRNAs of gold and greenish grey by transcriptome sequencing, and analyzed their functional and pathway enrichment.
2022-12-25 | GSE212495 | GEO
Project description:The genome resequencing of common carp var. 'Yellow River'
Project description:The coat color of mammals is determined by the melanogenesis pathway, which is responsible for maintaining the balance between black-brown eumelanin and yellow-reddish phaeomelanin. It is also believed that the color of the bovine nose is regulated in a similar manner; however, the molecular mechanism underlying pigment deposition in the black nose has yet to be elucidated. The aim of the present study was to identify melanogenesis-associated genes that are differentially expressed in the black vs. yellow nose of native Korean cows.
Project description:Ilex x ‘Whoa Nellie’ is a yellow leaf (YT) mutant of I. x ‘Nellie R. Stevens’ (WT), an important ornamental woody species. However, the molecular mechanism of the YT mutant remains unknown. Therefore，we compared yellow-colored mutant leaves and normal green leaves in transcriptomic terms. Our study contributed to uncovering molecular mechanisms underlying yellow leaf mutaion and provided a reference for the application of leaf color mutants.
Project description:As an important cold-water economic fish species, rainbow trout (Oncorhynchus mykiss) exhibits several intra-specific variation in skin pigmentation that can give rise to distinctive phenotypes, and wild-type rainbow trout with black skin (WR) and yellow mutant rainbow trout with yellow skin (YR) are the major two types in the farms, whose distinct skin colors make them suitable model for elucidating the skin pigmentation process. Skin color as a key indicator for selection in rainbow trout farming as well as has a strong visual impact on the consumer when rainbow trout are marketed. Previously, extensive studies have been conducted on skin color in rainbow trout, including the observation of skin spots and the expression analysis of some important pigment genes. However, up to date, no studies have systematically examined the molecular regulation mechanism of skin color difference between WR and YR through a high throughput method. Therefore, the aim of this study was to reveal the molecular regulation mechanism of skin color difference between these two strains at the mRNA and miRNA transcriptome level, and candidate genes, miRNAs and miRNA-mRNA pairs that may be responsible for rainbow trout albinism were obtained.
2022-04-21 | GSE172482 | GEO
Project description:Integrative Transcriptomics and Metabolomics Analysis of Body Color Formation in the common carp
