Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Integrative Transcriptomics and Metabolomics Analysis of Body Color Formation in the common carp

PROVIDER: PRJNA930314 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR23300757_1.fastq.gz	Fastqsanger.gz
	SRR23300757_2.fastq.gz	Fastqsanger.gz
	SRR23300758_1.fastq.gz	Fastqsanger.gz
	SRR23300758_2.fastq.gz	Fastqsanger.gz
	SRR23300759_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 12

Similar Datasets

Project description:Yellow River Carp Abnormal Body Color

| PRJNA1293467 | ENA

Changes in brain transcriptome and metabolome of juvenile crucian carp after chronic deltamethrin exposure

Project description:Deltamethrin (Del) is a widely administered pyrethroid insecticide that is established as a common contaminant of the freshwater environment and can be detected in many freshwater ecosystems even at lower concentrations. In this study, we investigated the changes in brain transcriptome and metabolome of crucian carp after exposure to 0.6 μg/L Del for 28 days. Antioxidant system analysis revealed that Del exposure significantly increases MDA concentration, and the activity of SOD was significantly inhibited in the brain (p < 0.05). Moreover, a total of 70 differential metabolites (DMs) were identified by the liquid chromatography-mass spectrometry (LC-MS/MS) system analysis, including 32 upregulated and 38 downregulated DMs in the DG group. The DMs associated with chronic Del exposure were enriched in steroid hormone biosynthesis, fatty acid metabolism, and glycerophospholipid metabolisms, such as prostaglandin G2, 5-oxoeicosatetraenoic acid, progesterone, androsterone, etiocholanolone, and hydrocortisone. Simultaneously, transcriptomics analysis revealed that chronic Del exposure caused lipid metabolism disorder, endocrine disruption, and proinflammatory immune response by upregulating the pla2g4, cox2, log5, ptgis, lcn, and cbr gene expression. Importantly, the integrative analysis of transcriptomics and metabolomics indicated that the arachidonic acid (AA) metabolism pathway and steroid hormone biosynthesis were decisive pathways in the brain tissue of crucian carp after Del exposure. Further, Del exposure perturbed the tight junction, HIF-1 signaling pathway, and thyroid hormone signaling pathway. Overall, transcriptome and metabolome data in our study offer a new insight to assess the risk of chronic Del exposure in fish brains.

2024-02-01 | GSE225411 | GEO

fish gut metagenome

Project description:Gut microbiomeof Oujiang color common carp (Cyprinus carpio var. color)

| PRJNA1056799 | ENA

Transcriptome analysis of marigold color

Project description:Marigold (Tagetes erecta L.) is an important ornamental plant with a wide variety of colors. Despite its economic value, there are few biochemical and molecular basic studies of flower color in marigold. To study the mechanism behind its color formation, metabolomics analysis and de novo cDNA sequencing was performed on marigold inbred line ‘V-01’ and its petal color mutant ‘V-01M’, in four flower developmental stages.

2019-10-14 | GSE138728 | GEO

Identification of miRNA from Cyprinus carpio by high-throughput sequencing and bioinformatics analysis

Project description:Common carp is one of the main commercial fishes captured and cultured worldwide. Although common carp genome is not finished yet, this study provides a first large scale cloning and characterization of common carp miRNAs and their potential targets. These miRNAs add to the growing database of new miRNA and lay the foundation for further understanding of miRNA function in gene regulation of common carp.

2012-07-16 | GSE35131 | GEO

Using comparative proteomics reveal the blue body color formation of Rhopilema esculenta

Project description:In this study, we collected the inner epidermis of umbrella from blue and brown R. esculenta for comparative metabolomic and proteomic analyses to reveal the blue body color formation. In summary, these results explored our knowledge of the blue body color formation of R. esculenta and provided valuable guidance to future studies of color breeding and blue pigment application in jellyfish.

2022-12-30 | PXD039114 |

Identification of miRNA information related to different skin color of golden-backed crucin carp

Project description:In order to explore the regulatory information of the two different color associations in crucian carp, we identified the differential miRNAs of gold and greenish grey by smallRNA sequencing, and analyzed their functional and pathway enrichment.

2022-12-22 | GSE212497 | GEO

Project description:Comparative Skin Transcriptome of two Oujiang Color Common Carp (Cyprinus carpio var. color) varieties

| PRJNA438850 | ENA

Effect of astaxanthin on carp quality and its metabolic pathway in vivo

Project description:This study evaluated the effects of astaxanthin on the traits of common carp (Cyprinus carpio L.) and identified the causes of flesh color changes. The conversion of astaxanthin by the liver was assessed based on in vitro experiments. Using liver proteomics, computer-aided protein homology modeling and reverse molecular docking techniques, the possible metabolic pathways of astaxanthin in common carp were analyzed.

2023-10-17 | PXD046174 |

Identification of miRNA from Cyprinus carpio by high-throughput sequencing and bioinformatics analysis

2012-07-16 | E-GEOD-35131 | biostudies-arrayexpress