Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Mus musculus

ABSTRACT: A draft map of cis-regulatory sequences in the mouse genome [ChIP-Seq]

PROVIDER: PRJNA142963 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR206986.fastq.gz	Fastqsanger.gz
	SRR206987.fastq.gz	Fastqsanger.gz
	SRR206988.fastq.gz	Fastqsanger.gz
	SRR206989.fastq.gz	Fastqsanger.gz
	SRR206990.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 225

Similar Datasets

Mus musculus

Project description:A draft map of cis-regulatory sequences in the mouse genome [RNA-Seq]

| PRJNA142823 | ENA

Mus musculus

Project description:A draft map of cis-regulatory sequences in the mouse genome [HiC]

| PRJNA150507 | ENA

A draft map of cis-regulatory sequences in the mouse genome

Project description:A draft map of cis-regulatory sequences in the mouse genome

| PRJNA139991 | ENA

Mus musculus

Project description:HOX13 activity reprograms cis-regulatory modules during digit development (ChIP-Seq)

| PRJNA321345 | ENA

Testis expression in Mus musculus domesticus WSB/EiJ x Mus musculus musculus PWD/PhJ F2 hybrids

Project description:To characterize the genetic basis of hybrid male sterility in detail, we used a systems genetics approach, integrating mapping of gene expression traits with sterility phenotypes and QTL. We measured genome-wide testis expression in 305 male F2s from a cross between wild-derived inbred strains of M. musculus musculus and M. m. domesticus. We identified several thousand cis- and trans-acting QTL contributing to expression variation (eQTL). Many trans eQTL cluster into eleven ‘hotspots,’ seven of which co-localize with QTL for sterility phenotypes identified in the cross. The number and clustering of trans eQTL - but not cis eQTL - were substantially lower when mapping was restricted to a ‘fertile’ subset of mice, providing evidence that trans eQTL hotspots are related to sterility. Functional annotation of transcripts with eQTL provides insights into the biological processes disrupted by sterility loci and guides prioritization of candidate genes. Using a conditional mapping approach, we identified eQTL dependent on interactions between loci, revealing a complex system of epistasis. Our results illuminate established patterns, including the role of the X chromosome in hybrid sterility.

2014-05-01 | GSE54089 | GEO

Mus musculus

Project description:Identification of an LHX target cis-regulatory element through LHX6 ChIP-seq.

| PRJNA291399 | ENA

Bidirectional Introgression between Mus musculus domesticus and Mus spretus.

Project description: Not available

| S-EPMC8784167 | biostudies-literature

Mus musculus

Project description:Identification of a novel Aire-regulating cis-regulatory element using H3K27ac ChIP-seq

| PRJNA299575 | ENA

Mus musculus intestinal epithelial MODE-K cells incubated with Heligmosomoides bakeri secreted extracellular vesicles (EVs)

Project description:Small RNAs are emerging as important molecules for cross-species communication. Thanks to available and affordable sequencing technologies it is now possible to sequence small RNAs (sRNA-Seq) present in samples of interacting organisms. A first step when analyzing sRNA-Seq of two interacting species is to determine which sequences are being produced by which organism. Due to their small size (18-30), small RNAs could easily map to both host and parasite genomes. Here we produced data for Mus musculus intestinal epithelial cells treated with Extracellular Vesicles (EV) produced by the parasitic nematode Heligmosomoides bakeri.

2018-12-31 | GSE124506 | GEO

TFF2 miRNA expression in Mus musculus

Project description:The aim of the study was to investigate whether the trefoil peptide genes, in concerted action with a miRNA regulatory network, were contributing to nutritional maintrenance. Using a Tff2 knock-out mouse model, 48 specific miRNAs were noted to be significantly deregulated when compared to the wild type strain.

2012-01-01 | GSE25815 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data