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Arabidopsis thaliana

ABSTRACT: Genome-wide identification of non-coding RNAs targeted by XRN exoribonucleases in collaboration with FRY1 using RNA-Seq in Arabidopsis thaliana.

OTHER RELATED OMICS DATASETS IN: E-GEOD-34654

PROVIDER: PRJNA151239 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR393798.fastq.gz	Fastqsanger.gz
	SRR393799.fastq.gz	Fastqsanger.gz
	SRR393800.fastq.gz	Fastqsanger.gz
	SRR393801.fastq.gz	Fastqsanger.gz
	SRR393802.fastq.gz	Fastqsanger.gz

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Genome-wide identification of non-coding RNAs targeted by XRN exoribonucleases in collaboration with FRY1 using RNA-Seq in Arabidopsis thaliana.

2012-05-03 | GSE34654 | GEO

Genome-wide identification of non-coding RNAs targeted by XRN exoribonucleases in collaboration with FRY1 using RNA-Seq in Arabidopsis thaliana.

Project description:We report new insight of non-coding RNA degradation mediated by XRN exoribonucleases and FRY1 in Arabidopsis thaliana. We suggest that XRN3, in combination with FRY1, is required to prevent the accumulation of 3’ extensions that arise from thousands of mRNA and miRNA precursor transcripts. Examination of genome-wide transcriptomes of Arabidopsis genotypes such as fry1-6, xrn3-3, xrn2-1xrn3-3, xrn2-1xrn4-6 and xrn3-3xrn4-6 using directional RNA-Seq method.

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