Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Flavobacterium sp. URHB0058

ABSTRACT: Flavobacterium sp. URHB0058

PROVIDER: PRJNA190843 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR896511_1.fastq.gz	Fastqsanger.gz
	SRR896511_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 2 of 2

Similar Datasets

Hemicellulose utilisation in Flavobacterium

Project description:The plant hemicellulose xyloglucan (XyG) is secreted from the roots of numerous plant species, including cereals, and contributes towards soil aggregate formation in terrestrial systems. Whether XyG represents a key nutrient for plant-associated bacteria is unclear. The phylum Bacteroidota are abundant in the plant microbiome and provide several beneficial functions for their host. However, the metabolic and genomic traits underpinning their success remain poorly understood. Here, we employed whole-cell proteomics to determine the molecular mechanisms responsible for xyloglucan utilisation in two model Flavobacterium species, Flavobacterium johnsoniae DSM2064 and Flavobacterium sp. OSR005. We identified the occurrence of a distinct and conserved gene cluster, referred to as the Xyloglucan Utilisation Loci (XyGUL). Flavobacterium XyGUL is a hybrid of the molecular machinery found in gut Bacteroides spp., Cellvibrio japonicus, and the plant pathogen Xanthomonas. Combining protein biochemistry, computational modelling and phylogenetics, we identified a mutation in the enzyme required for initiating hydrolysis of the XyG polysaccharide, an outer membrane endoxyloglucanase glycoside hydrolase family 5 subfamily 4 (GH5_4), which enhances activity towards XyG.

2025-05-07 | PXD053370 | Pride

uncultured Flavobacterium sp.

Project description:uncultured Flavobacterium sp. overview

| PRJNA1012797 | ENA

Flavobacterium sp. JRM

Project description:Flavobacterium sp. Genome sequencing

| PRJNA265078 | ENA

Project description:WTCCC2 project Schizophrenia (SP) samples

| EGAD00010000262 | EGA

Flavobacterium sp.

Project description:Flavobacterium sp. Genome sequencing and assembly

| PRJNA1047287 | ENA