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Homo sapiens strain:(KHV) Kinh in Ho Chi minh City, Vietnam

ABSTRACT: CompleteGenomics sequencing of (KHV) Kinh in Ho Chi minh City, Vietnam. DNA for sequencing was extracted from whole blood

PROVIDER: PRJNA194104 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR833540_1.fastq.gz	Fastqsanger.gz
	SRR833540_2.fastq.gz	Fastqsanger.gz

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Homo sapiens strain:(KHV) Kinh in Ho Chi minh City, Vietnam

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The dynamics of GII.4 Norovirus in Ho Chi Minh City, Vietnam.

Project description:Norovirus (NoV) is a major cause of epidemic gastroenteritis in industrialized countries, yet the epidemiological significance of NoV in industrializing countries remains poorly understood. The spatiotemporal distribution of NoV genotypes identified in 2054 enrolled children was investigated between May 2009 and December 2010, in Ho Chi Minh City (HCMC), Vietnam. A total of 315 NoV extracted from stool samples were genotyped and GPS mapped to their source. Genogroup II NoV, particularly GII.4, were predominant, and the GII.4 strains could be subgrouped into GII.4-2006b (Minerva) and GII.4-2010 (New Orleans) variants. There was no spatiotemporal structure among the endemic GII strains; yet a significant spatiotemporal signal corresponding with the novel introduction of GII.4-2010 variant was detected. These data show that NoV GII.4 variants are highly endemic in HCMC and describe a scenario of rapid NoV strain replacement occurring in HCMC in early 2010.

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Endemic norovirus infections in children, Ho Chi Minh City, Vietnam, 2009-2010.

Project description:We performed a case-control investigation to identify risk factors for norovirus infections among children in Vietnam. Of samples from 1,419 children who had diarrhea and 609 who were asymptomatic, 20.6% and 2.8%, respectively, were norovirus positive. Risk factors included residential crowding and symptomatic contacts, indicating person-to-person transmission of norovirus.

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The seroincidence of childhood Shigella sonnei infection in Ho Chi Minh City, Vietnam.

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