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Alternanthera philoxeroides

ABSTRACT: Alternanthera philoxeroides Transcriptome or Gene expression

PROVIDER: PRJNA256237 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR1525760.fastq.gz	Fastqsanger.gz
	SRR1525761.fastq.gz	Fastqsanger.gz
	SRR1525762.fastq.gz	Fastqsanger.gz
	SRR1525763.fastq.gz	Fastqsanger.gz
	SRR1525764.fastq.gz	Fastqsanger.gz

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Induction of miR162 contributes to invasive habitat adaption of Alternanthera philoxeroides

Project description:Rapid phenotypic changes in adaptive traits are crucial for organisms to thrive in changing environments. Alternanthera philoxeroides, originally a terrestrial plant from South America, has become an invasive weed in Asia, capable of colonizing both aquatic and terrestrial habitats. The mechanism by which this invasive habitat is rapidly achieved without genetic variation remains unknown. Here, we demonstrate that miRNA activity in A. philoxeroides plays a significant role in its high invasive capacity. Our results highlight that an intact miRNA pathway is essential for the survival of A.philoxeroides in aquatic habitats. We identified one key miRNA, Aph-miR162, that promotes rapid elongation of stem in aquatic environments. Upon water submergence, the levels of miR162 significantly increased in stems from 3 hours to 24 hours. TRV based VIGS-mediated knockdown of Aph-miR162 significantly disrupted stem elongation in water submergence condition, ultimately resulting in a failure of plants protruding from the water surface. Interestingly, miR162 was not up-regulated in the non-invasive sibling species Alternanthera pungens, which also originates from South America but has retained its original terrestrial habitats in Asia. More importantly, delivering the antisense RNA oligos complementary to Aph-miR162 via the nanoparticle method significantly impaired stem elongation upon water submergence, causing A. philoxeroides to wither after 2-3 weeks. Thus, our findings reveal that the miRNA pathway can drive rapid phenotypic variation, facilitating adaptation to aquatic environments. Importantly, miR162 has the potential as a bio-pesticide for controlling the invasive capacity of A. philoxeroides.

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Project description:De novo characterization of alligator weed (Alternanthera philoxeroides) transcriptome shedding light on gene expression under potassium deprivation

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Project description:Alternanthera philoxeroides cultivar:Jinan1 Genome sequencing and assembly

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Genome-wide identification of AphEIN3-targeted genes in A. philoxeroides

Project description:Ethylene play a key role in submergence stress. The invasive plant Alternanthera philoxeroides has strong resistance to submergence stress, but the related mechanisms are not clear. We found that the ethylene signaling component AphEIN3 may be involved. To investigate the genome-wide AphEIN3 binding sites, we performed a DNA affinity purification sequencing (DAP-seq) as described by (Bartlett et al., 2017). In two replicates, approximately 22,604 peaks (for 6,831 genes) and 29,912 peaks (for 8,547 genes) were identified as high-confidence AphEIN3 binding peaks. Combined with RNA-seq analysis, we found that submergence can induce AphEIN3 binds to a cluster of elongation genes to regulate theses gene expression.

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