Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Glycine max

ABSTRACT: Transcriptomics of weed stress in soybean

PROVIDER: PRJNA256960 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR1531420_1.fastq.gz	Fastqsanger.gz
	SRR1531420_2.fastq.gz	Fastqsanger.gz
	SRR1531421_1.fastq.gz	Fastqsanger.gz
	SRR1531421_2.fastq.gz	Fastqsanger.gz
	SRR1531422_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 23

Similar Datasets

Phosphoproteomic sequencing of Glycine max under alkali stress

Project description:Alkali stress is one of the most severe abiotic stresses affecting agricultural production worldwide. To understand the phosphorylation events in soybean in response to alkali stress, we performed the TMT labeling-based quantitative phosphoproteomic analyses on soybean leaf and root tissues under 50 mM NaHCO3 treatment.

2024-01-26 | PXD041842 | Pride

Glycine max

Project description:soybean salt stress (PRJCA041764)

| PRJDB38718 | ENA

Glycine max

Project description:Salt stress in soybean (PRJCA038382)

| PRJDB38602 | ENA

Identification of chilling responsive microRNAs and their targets in vegetable soybean (Glycine max L.)

Project description:Chilling stress is a major factor limiting the yield and quality of vegetable soybean (Glycine max L.) on a global scale. Systematic identification and function analysis of miRNA under chilling stress could be helpful to clarify the molecular mechanism of chilling resistance. In the present study, two independent small RNA libraries from leaves of vegetable soybean were constructed, and sequenced with the high-throughput Illumina Solexa system. A total of 434 known miRNAs and three novel miRNAs were identified. Moreover, the expression patterns of these miRNAs have been verified by qRT-PCR analysis. Furthermore, we identified their gene targets by high-throughput degradome sequencing and validated using 5'-RACE. A total of 898 transcripts were targeted by 54 miRNA families attributed to five categories. More importantly, we identified 55 miRNAs that differentially expressed between chilling stress and the control. The targets of these miRNAs were enriched in oxidation-reduction, signal transduction, and metabolic process functional categories. The qRT-PCR confirmed that there was a negative relationship among the miRNAs and their targets under chilling stress. Our work provides comprehensive molecular evidence for the possible involvement of miRNAs in the process of chilling-stress responses in vegetable soybean.

2016-12-28 | GSE76435 | GEO

Glycine max Transcriptome or Gene expression

Project description:Tropospheric ozone (O3) is a secondary air pollutant and anthropogenic greenhouse gas. Concentrations of tropospheric O3 have more than doubled since the Industrial Revolution, and are high enough to damage plant productivity. Soybean (Glycine max L. Merr.) is the worldâs most important legume crop and is sensitive to O3. Current ground-level O3 are estimated to reduce global soybean yields by 6% to 16%. In order to understand transcriptional mechanisms of yield loss in soybean, we examined the transcriptome of soybean flower and pod tissues exposed to elevated O3 using RNA-Sequencing.

2015-01-31 | E-MTAB-5226 | biostudies-arrayexpress

GmMEKK2 enhanced mosaic virus resistance in soybean (Glycine max L.)

Project description:Mitogen-activated protein kinase kinase kinase (MAPKKK) assume a pivotal position within the MAPK cascade signaling pathway that converts external stimuli into intracellular responses, and plays a central role in adaptation and resistance to biotic and abiotic stress. Only a limited number of researches have reported that MAPKKK conducted on regulating the resistance to soybeans mosaic viruses (SMV). Here, we identified a MAPKKK 2-like gene named as GmMEKK2 from SMV resistance cultivar. Overexpression of GmMEKK2 in soybean not only reduced SMV content but also decreased the disease index of virus. Importantly, overexpression of GmMEKK2 mitigated the yield loss after SMV inoculation and improved the yield-related traits of soybean. These demonstrated that GmMEKK2 had a favorable role in SMV resistance. This study explored the functions of GmMEKK2 in soybean and provided an assertive solution for effectively improving SMV resistance.

2025-06-01 | GSE288208 | GEO

Glycine max

Project description:Soybean transcriptome raw sequence reads of soybean seeds for under aging stress

| PRJNA1112530 | ENA

Characterization of RNAs in soybean (Glycine max)

Project description:RNA-seq was used to characterize gene expression in soybean from a wide range of tissues. The primary focus of the project was small RNAs, and the identification of microRNAs and phased siRNA-generating loci, but RNA-seq data were generated from the same samples. This project was supported by the United Soybean Board.

2020-05-09 | GSE150157 | GEO

Glycine max

Project description:Daytime soybean transcriptome fluctuations during water deficit stress

| PRJNA285677 | ENA

Glycine max

Project description:RNA sequencing of soybean under mild drought stress

| PRJDB11892 | ENA