Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Gossypium hirsutum

ABSTRACT: Gossypium hirsutum Transcriptome or Gene expression

PROVIDER: PRJNA260471 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR1569164.fastq.gz	Fastqsanger.gz

Items per page:

1 - 1 of 1

Similar Datasets

Transcriptome of Gossypium hirsutum floral and extrafloral nectaries

Project description:Comparative RNA-Seq study of expression in Gossypium hirsutum nectaries

2018-04-19 | GSE113373 | GEO

Transcriptomics and Metabolomics of 10 - 28 day post anthesis cotton fiber from Gossypium hirsutum and Gossypium barbadense

Project description:Purpose: The goal of this experiment was to use RNA-seq to compare the two commercial cotton species Gossypium hirsutum and Gossypium barbadense and determine what transcripts may account for the better fiber quality in the latter. Methods: RNA was extracted from Gossypium barbadense or Gossypium hirsutum fibers at 10, 15, 18, 21, and 28 days post anthesis. Paired-end, 100-bp RNA-seq was performed on an Illumina HiSeq2000 and the reads were mapped to the Gossypium raimondii genome at www.phytozome.net and non-homologous contig assemblies from Gossypium arboreum. Results from RNA-seq were combined with non-targeted metabolomics. Results: Approximately 38,000 transcripts were expressed (RPKM>2) in each fiber type and approximately 2,000 of these transcripts were differentially expressed in a cross-species comparison at each timepoint. Enriched Gene Ontology biological processes in differentially expressed transcripts suggested that Gh fibers were more stressed. Conclusions: Both metabolomic and transcriptomic data suggest that better mechanisms for managing reactive oxygen species contribute to the increased fiber length in Gossypium barbadense. This appears to result from enhanced ascorbate biosynthesis via gulono-1,4-lactone oxidase and ascorbate recycling via dehydroascorbate reductase.

2015-06-26 | GSE64958 | GEO

Gossypium hirsutum

Project description:Gossypium hirsutum Transcriptome or Gene expression

| PRJNA522889 | ENA

Gossypium hirsutum

Project description:Gossypium hirsutum Transcriptome or Gene expression

| PRJNA490416 | ENA

Gossypium hirsutum

Project description:Gossypium hirsutum Transcriptome or Gene expression

| PRJNA207506 | ENA

Gossypium hirsutum

Project description:Gossypium hirsutum Transcriptome or Gene expression