Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Methylobacterium aquaticum strain:DSM 16371

ABSTRACT: Methylobacterium aquaticum DSM16371 type strain Genome sequencing

PROVIDER: PRJNA278000 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

Methylobacterium aquaticum

Project description:Methylobacterium aquaticum overview

| PRJNA278301 | ENA

Metabolites from methylobacterium aquaticum

Project description:This dataset contains mass spectrometry data from a metabolomics experiment focused on metabolites from a iron and lanthanide-utilizing bacteria known as methylobacterium aquaticum. Lanthanides are used in alcohol dehydrogenation for this species.

2025-07-10 | MSV000098477 | MassIVE

Metabolites from methylobacterium aquaticum

Project description:This dataset contains mass spectrometry data from a metabolomics experiment focused on metabolites from a lanthanide-utilizing bacteria known as methylobacterium aquaticum. Lanthanides are used in alcohol dehydrogenation for this species. From the 2025/07/02 run.

2025-07-10 | MSV000098478 | MassIVE

Metabolites from methylobacterium aquaticum

2025-07-22 | MSV000098595 | MassIVE

GNPS_Metabolites from methylobacterium aquaticum

2025-03-24 | MSV000097429 | GNPS

Engineered Methylobacterium methanol

Project description:Engineered Methylobacterium methanol batch exponential strain CM702 vs. strain CM502

2014-12-22 | E-GEOD-34662 | biostudies-arrayexpress

Halosimplex aquaticum strain:XZYJT29

Project description:Halosimplex aquaticum strain:XZYJT29 Genome sequencing

| PRJNA932174 | ENA

Rhizobium aquaticum strain:DSM 29780 | isolate:DSM 29780

Project description:Rhizobium aquaticum DSM 29780 genome sequencing

| PRJNA1115568 | ENA

Brachybacterium aquaticum strain:DSM 28796 | isolate:DSM 28796

Project description:Brachybacterium aquaticum DSM 28796 genome sequencing

| PRJNA632333 | ENA

Lanthanide-Dependent Methanol and Formaldehyde Oxidation in Methylobacterium aquaticum Strain 22A.

Project description:Lanthanides (Ln) are an essential cofactor for XoxF-type methanol dehydrogenases (MDHs) in Gram-negative methylotrophs. The Ln3+ dependency of XoxF has expanded knowledge and raised new questions in methylotrophy, including the differences in characteristics of XoxF-type MDHs, their regulation, and the methylotrophic metabolism including formaldehyde oxidation. In this study, we genetically identified one set of Ln3+- and Ca2+-dependent MDHs (XoxF1 and MxaFI), that are involved in methylotrophy, and an ExaF-type Ln3+-dependent ethanol dehydrogenase, among six MDH-like genes in Methylobacterium aquaticum strain 22A. We also identified the causative mutations in MxbD, a sensor kinase necessary for mxaF expression and xoxF1 repression, for suppressive phenotypes in xoxF1 mutants defective in methanol growth even in the absence of Ln3+. Furthermore, we examined the phenotypes of a series of formaldehyde oxidation-pathway mutants (fae1, fae2, mch in the tetrahydromethanopterin (H4MPT) pathway and hgd in the glutathione-dependent formaldehyde dehydrogenase (GSH) pathway). We found that MxaF produces formaldehyde to a toxic level in the absence of the formaldehyde oxidation pathways and that either XoxF1 or ExaF can oxidize formaldehyde to alleviate formaldehyde toxicity in vivo. Furthermore, the GSH pathway has a supportive role for the net formaldehyde oxidation in addition to the H4MPT pathway that has primary importance. Studies on methylotrophy in Methylobacterium species have a long history, and this study provides further insights into genetic and physiological diversity and the differences in methylotrophy within the plant-colonizing methylotrophs.

| S-EPMC7356819 | biostudies-literature

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data