Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Caenorhabditis elegans

ABSTRACT: Enrichment of H3K9me2 on unsynapsed chromatin in C. elegans does not target de novo sites [ChIP-Seq]

PROVIDER: PRJNA278752 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR1917670.fastq.gz	Fastqsanger.gz
	SRR1917671.fastq.gz	Fastqsanger.gz
	SRR1917667.fastq.gz	Fastqsanger.gz
	SRR1917668.fastq.gz	Fastqsanger.gz
	SRR1917669.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 5

Similar Datasets

Caenorhabditis elegans

Project description:Enrichment of H3K9me2 on unsynapsed chromatin in C. elegans does not target de novo sites [RNA-Seq]

| PRJNA278751 | ENA

Project description:Enrichment of H3K9me2 on unsynapsed chromatin in C. elegans does not target de novo sites

| PRJNA278750 | ENA

Caenorhabditis elegans

Project description:C elegans Wild Isolates Genome Sequencing and de novo Assembly

| PRJNA714280 | ENA

Enrichment of H3K9me2 on unsynapsed chromatin in C. elegans does not target de novo sites [ChIP-Seq]

Project description:Characterization of the H3K9me2 distribution in the C. elegans adult hermaphrodite genome using ChIP-Seq Examination of H3K9me2 in two different nematode strains: fer-1 control and fer-1;him-8 mutant, where the X chromosomes are unsynapsed. The fer-1 mutation prevents production of embryos.

2015-09-04 | E-GEOD-67028 | biostudies-arrayexpress

Caenorhabditis elegans strain:N2

Project description:Caenorhabditis elegans strains with extra artificial chromosomes and de novo centromere formation

| PRJNA704323 | ENA

Caenorhabditis elegans

Project description:Maternal piRNAs are essential for germline development following de-novo establishment of endo-siRNAs in Caenorhabditis elegans

| PRJNA284261 | ENA

Bisection of the X Chromosome Disrupts the Initiation of Chromosome Silencing during Meiosis in Caenorhabditis elegans

Project description:During meiosis, gene expression is silenced in aberrantly unsynapsed chromatin and in heterogametic sex chromosomes. Initiation of sex chromosome silencing is disrupted in meiocytes with sex chromosome-autosome translocations. To determine whether this is due to aberrant synapsis or loss of continuity of sex chromosomes, we engineered Caenorhabditis elegans with non-translocated, bisected X chromosomes. In early meiocytes of mutant males and hermaphrodites, X segments were enriched with euchromatin assembly markers and active RNA polymerase II staining, indicating active transcription. Analysis of RNA-seq data showed that genes from the X chromosome were upregulated in gonads of mutant worms. Contrary to previous models, which predicted that any unsynapsed chromatin is silenced during meiosis, our data indicate that unsynapsed X segments are transcribed. Therefore, our results suggest that sex chromosome chromatin has a unique character that facilitates its meiotic expression when its continuity is lost, regardless of whether or not it is synapsed.

2021-05-24 | GSE171938 | GEO

Caenorhabditis elegans

Project description:Development of GRO-cap (GRO-seq followed by 5'-cap enrichment) to map transcription start sites in C. elegans

| PRJNA184363 | ENA

Caenorhabditis elegans

Project description:Comprehensive discovery of endogenous Argonaute binding sites in C. elegans

| PRJNA120681 | ENA

Caenorhabditis elegans extracellular vesicle

Project description:The nematode Caenorhabditis elegans has evolutionarily conserved EV signaling pathways. In this study, we apply a recently published method for high specificity purification of EVs from C. elegans to carry out target-independent proteomic and RNA analysis of EVs from C. elegans. Our experiments uncovered diverse coding and non-coding RNA transcripts as well as protein cargo types commonly found in human EVs.

2020-08-05 | GSE146973 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data