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Danio rerio

ABSTRACT: Quantitative Analysis of ZF4 cells Transcriptomes when Infected with Edwardsiella tarda

PROVIDER: PRJNA322517 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR3571772_1.fastq.gz	Fastqsanger.gz
	SRR3571772_2.fastq.gz	Fastqsanger.gz
	SRR3571773_1.fastq.gz	Fastqsanger.gz
	SRR3571773_2.fastq.gz	Fastqsanger.gz

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Quantitative Analysis of ZF4 cells Transcriptomes when Infected with Edwardsiella tarda

Project description:Edwardsiella tarda is a Gram-negative bacterial pathogen that can infect a wide range of freshwater and marine fish. However, the immune evasion mechanisms of Edwardsiella tarda is not fully understood. We found that Edwardsiella tarda infection generally significantly upregulated and downregulated a lot of immune-related genes of zebrafish ZF4 cells using RNA-seq technology.

2017-02-14 | GSE81773 | GEO

Danio rerio

Project description:Transcriptome analysis of the zebrafish embryonic host response to Edwardsiella tarda infection [experiment B]

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Transcriptome analysis of the zebrafish embryonic host response to Edwardsiella tarda infection

Project description:This SuperSeries is composed of the following subset Series: GSE28481: Transcriptome analysis of the zebrafish embryonic host response to Edwardsiella tarda infection using a static immersion systems [experiment A] GSE28485: Transcriptome analysis of the zebrafish embryonic host response to Edwardsiella tarda infection [experiment B] Refer to individual Series

2011-09-30 | E-GEOD-28486 | biostudies-arrayexpress

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Project description:Effects of rapamycin exposure on zebrafish ZF4 cells

| PRJNA230818 | ENA

Gene expression profiles of vaccinated fish using a long-term efficiency mixed vaccine against Edwardsiella tarda performed by a new designed oligo DNA microarray in Japanese flounder Paralichthys olivaceus

Project description:Gene expression profiles by microarray have contributed for a elucidation of an immune-response and a determination of efficiency in vaccination. Recent day, edwardsielosis have caused a fatal damage in the aquaculture of Japanese flounder, Paralichthys olivaceus. However the formalin killed-cell vaccines made from Edwardsiella tarda isolated same fish species were not efficient. Recent our study revealed the mixed FKC vaccine made from the two different type of E. tarda protected Japanese flounder against Edwardsiella tarda infection for long-term. In this study, we analyzed the immune-response of a vaccinated fish kidney using the mixed FKC vaccine against Edwardsiella tarda with an Agilent custom-oligo DNA microarray on 9,573 probes of Japanese flounder. Our study revealed that the mixed FKC vaccine confered a strong immune-response and keeped a efficient for long-term on Japanese flounder.

2014-12-31 | GSE26808 | GEO

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Project description:Transcriptome analysis of the zebrafish embryonic host response to Edwardsiella tarda infection using a static immersion systems [experiment A]

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Danio rerio strain:Edwardsiella tarda

Project description:Danio rerio strain:Edwardsiella tarda Transcriptome or Gene expression

| PRJNA79211 | ENA

Transcriptome analysis of the zebrafish embryonic host response to Edwardsiella tarda infection [experiment B]

Project description:Transcriptional profiling of the zebrafish embryonic host response to infection by injection of 200 CFUs of Edwardsiella tarda (strain FL6-60)

2011-10-01 | GSE28485 | GEO

First report of natural co-infections and protein profile of Indian Major Carp, Labeo rohita

Project description:A quantitative proteomics approach investigated the natural co-infected Labeo rohita kidney. A kidney proteome of L. rohita was utilized to understand the in-depth knowledge of rohu for disease mechanisms. Comparative proteome analysis was performed for our earlier submitted proteome of control and Edwardsiella tarda infected kidney using label free quantitative proteomics. High-resolution mass spectrometry was used for data using label-free quantification. Label-free proteomic analysis showed pathogenicity mechanisms related to apoptosis, lysosome, metabolic pathway, immune system and cellular response to stress in the kidney of co-infected rohu. The study specifies that co-infection for the first time in the winter season was capable of causing pathological changes in L. rohita. The initial proteome analysis of naturally co-infected rohu kidneys identified novel proteins that could aid in developing strategies for combating multiple pathogens and enhancing climate resilience in aquaculture.

2025-10-08 | PXD059581 | Pride

Transcriptome analysis of the zebrafish embryonic host response to Edwardsiella tarda infection [experiment B]

Project description:Transcriptional profiling of the zebrafish embryonic host response to infection by injection of 200 CFUs of Edwardsiella tarda (strain FL6-60) All infection experiments were performed using mixed egg clutches of Albino strain zebrafish. Embryos were staged at 28 hours post fertilization (hpf) by morphological criteria and approximately 200 cfu of mCherry expressing E. tarda bacteria were injected into the caudal vein close to the urogenital opening. As a control an equal volume of PBS was likewise injected. Single embryos of the infected and control group were collected 8 hours post infection (hpi).

2011-09-30 | E-GEOD-28485 | biostudies-arrayexpress

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