Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Brachypodium distachyon strain:Bd21-3 X Bd3-1 F2 Pool 932 | cultivar:Bd21-3 X Bd3-1 F2 Pool 932

ABSTRACT: Brachypodium distachyon strain:Bd21-3 X Bd3-1 F2 Pool 932 | cultivar:Bd21-3 X Bd3-1 F2 Pool 932 Genome sequencing

PROVIDER: PRJNA333728 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR4156113_1.fastq.gz	Fastqsanger.gz
	SRR4156113_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 2 of 2

Similar Datasets

Brachypodium distachyon strain:Bd21-3 X Bd3-1 F2 Pool 41 | cultivar:Bd21-3 X Bd3-1 F2 Pool 41

Project description:Brachypodium distachyon strain:Bd21-3 X Bd3-1 F2 Pool 41 | cultivar:Bd21-3 X Bd3-1 F2 Pool 41 Genome sequencing

| PRJNA333726 | ENA

Brachypodium distachyon strain:Bd21-3 X Bd3-1 F2 Pool 41-5 | cultivar:Bd21-3 X Bd3-1 F2 Pool 41-5

Project description:Brachypodium distachyon strain:Bd21-3 X Bd3-1 F2 Pool 41-5 | cultivar:Bd21-3 X Bd3-1 F2 Pool 41-5 Genome sequencing

| PRJNA333727 | ENA

Transcriptomic study (RNAseq) of diurnal expression of Brachypodium distachyon ecotypes Bd21 and Bd21-3 under submergence stress

Project description:To study the diurnal transcriptome (RNA-seq) expressed by the monocot model plant B. distachyon under submergence stress, we analyzed two different ecotypes (Bd21, submergence sensitive; Bd21-3, submergence tolerant) at 5 different time points (dawn, ZT0; midday, ZT8; dusk, ZT16; middnight ZT20, end of night, ZT24).

2022-10-15 | GSE215159 | GEO

Neuroligin-associated microRNA-932 targets actin and regulates memory

Project description:Increasing evidence suggests microRNAs (miRNAs) control levels of mRNA expression during development of the nervous system and during sensory elicited remodelling of the brain. We used an associative olfactory learning paradigm (proboscis extension response) in the honeybee Apis mellifera to detect gene expression changes in the brain. Transcriptome analysis of bees trained to associate an odor with a reward and control bees exposed to air without reward, helped us abstract mRNA-miRNA interactions for empirical testing. Functional studies, feeding cholesterol-conjugated antisense RNA to bees resulted in the inhibition of miR-210 and of miR-932 that is embedded within the neuroligin 2 (Nlg2) gene involved in synapse development. Loss of miR-932 prevents long-term memory formation but not learning. We validated 3’UTR target site interactions of miR-932 and show miR-932 dysregulates actin, a key cytoskeletal molecule involved in neuronal development and activity-dependent plasticity of the brain.

2014-02-01 | GSE51795 | GEO

Klebsiella quasipneumoniae strain:932

Project description:Klebsiella quasipneumoniae strain:932 Genome sequencing

| PRJNA1286925 | ENA

Neuroligin-associated microRNA-932 targets actin and regulates memory

Project description:Increasing evidence suggests microRNAs (miRNAs) control levels of mRNA expression during development of the nervous system and during sensory elicited remodelling of the brain. We used an associative olfactory learning paradigm (proboscis extension response) in the honeybee Apis mellifera to detect gene expression changes in the brain. Transcriptome analysis of bees trained to associate an odor with a reward and control bees exposed to air without reward, helped us abstract mRNA-miRNA interactions for empirical testing. Functional studies, feeding cholesterol-conjugated antisense RNA to bees resulted in the inhibition of miR-210 and of miR-932 that is embedded within the neuroligin 2 (Nlg2) gene involved in synapse development. Loss of miR-932 prevents long-term memory formation but not learning. We validated 3M-bM-^@M-^YUTR target site interactions of miR-932 and show miR-932 dysregulates actin, a key cytoskeletal molecule involved in neuronal development and activity-dependent plasticity of the brain. The analysis used Air group (no odor learning) as control sample for comparison to two groups of odor-conditioned bees: linalool and floral mix.

2014-02-01 | E-GEOD-51795 | biostudies-arrayexpress

Rhizobium tumorigenes strain:932

Project description:Rhizobium tumorigenes strain:932 Genome sequencing and assembly

| PRJNA686792 | ENA

Thlaspi arvense cultivar:2020-M2-932

Project description:Thlaspi arvense 2020-M2-932 Resequencing

| PRJNA1239561 | ENA

Brachypodium distachyon strain:Bd1-1, Bd21-3, Bd21, Bd3-1, Bd30-1, BdTR12c, Koz-3

Project description:Brachypodium distachyon strain:Bd1-1, Bd21-3, Bd21, Bd3-1, Bd30-1, BdTR12c, Koz-3 Transcriptome or Gene expression

| PRJNA253150 | ENA

Mowing Alters Nutrient Element Accumulation Patterns and Reprograms Root Transcriptional Regulation in Brachypodium distachyon Bd21

Project description:Mowing is a common practice to agricultural and horticultural grass species. Nonetheless, it has been unclear how mowing may affect roots at the levels of nutrient accumulation and transcriptional regulation. Hereby we report a comprehensive investigation on molecular impacts of mowing by using a model grass species, Brachypodium distachyon Bd21.

2019-05-24 | GSE101500 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data