Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Lineolata rhizophorae strain:ATCC 16933 | isolate:ATCC 16933

ABSTRACT: Lineolata rhizophorae ATCC16933 Standard Draft genome sequencing

PROVIDER: PRJNA334192 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SRR4144055_1.fastq.gz	Fastqsanger.gz
	SRR4144055_2.fastq.gz	Fastqsanger.gz
	SRR4144056_1.fastq.gz	Fastqsanger.gz
	SRR4144056_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 5

Similar Datasets

Lineolata rhizophorae strain:ATCC 16933 | isolate:ATCC 16933

Project description:Lineolata rhizophorae ATCC16933 Transcriptome

| PRJNA372851 | ENA

Lineolata rhizophorae

Project description:Lineolata rhizophorae overview

| PRJNA373770 | ENA

Batocera lineolata

Project description:Batocera lineolata Genome sequencing

| PRJNA1309302 | ENA

Oxyeleotris lineolata

Project description:Oxyeleotris lineolata

| PRJNA1079690 | ENA

Sepioloidea lineolata MSMS

Project description:Sepioloidea lineolata, the striped pyjama squid (family Sepiadariidae), is a small species of benthic squid distributed along the Southern Indo-Pacific coast of Australia. All sepiadariid squids are known to secrete large volumes of viscous slime when stressed. The proteome of S. lineolata slime was analysed by combining high resolution mass spectrometry data with an S. lineolata transcriptome assembled from five tissues including slime. The composition of S. lineolata slime was also compared to that of the closely related S. austrinum (southern bottletail squid). Of the 550 protein groups identified in S. lineolata slime, 321 had orthologs in S. austrinum, and the abundance of these (iBAQ) was highly correlated between species. Both slimes were dominated by a small number of highly abundant proteins and several of these were short secreted proteins that had no homologues outside the class Cephalopoda. The extent of N-glycosylation in the slime of S. lineolata was also studied via glycan cleavage with PNGase-F. Four proteins had strong evidence of N-glycosylated, with treatment with PNGase-F showing a slight increase in peptide identification rates.

2022-02-28 | PXD010283 | Pride

Oxyeleotris lineolata

Project description:Oxyeleotris lineolata overview

| PRJNA1079852 | ENA

Batocera lineolata

Project description:Batocera lineolata overview

| PRJNA734390 | ENA

Ophthalmolepis lineolata

Project description:Ophthalmolepis lineolata overview

| PRJNA1228248 | ENA

Yarrowia lipolytica strain:ATCC 18944 | isolate:ATCC 18944

Project description:Yarrowia lipolytica ATCC18944 - Standard Draft genome sequencing