Project description:Deep sequencing of Brachypodium distachyon small RNA from panicles (flowers) was done to analyze the genome-wide distribution patterns of 1) total small RNA reads and loci, 2) 21 and 24 nucleotide repeat-normalized reads and 3) 21 and 24 nucleotide phased siRNA clusters relative to gene and transposable element density.

2010-02-15 | GSE20195 | GEO

differential expression analysis to hight co2 of the brachypodium distachyon-Differential expression of project NGS20_04_HIPATH

Project description:ngs2020_04_hipath-differential expression analysis to hight co2 of the brachypodium distachyon-Analysis response of the Brachypodium distachyon to hight CO2 -treatment hight CO2

2023-07-27 | GSE229886 | GEO

Comparative RNA-sequencing of Brachypodium distachyon wild-type and bdmute mature leaf zones

Project description:Comparative RNA-sequencing of the mature leaf zones in Brachypodium distachyon wild type and bdmute mutants that do not form stomatal subsidiary cells was performed. The aim was to identify genes relevant for subsidiary cell function in B. distachyon.

2022-07-11 | GSE206682 | GEO

Comparative RNA-sequencing of Brachypodium distachyon wild-type and bdmute developing leaf zones

Project description:Comparative RNA-sequencing of the developmental leaf zones in Brachypodium distachyon wild type and bdmute mutants that do not form stomatal subsidiary cells was performed. The aim was to identify genes relevant for subsidiary cell formation in B. distachyon.

2022-04-25 | GSE201294 | GEO

Tissue and developmental atlas of Brachypodium distachyon

Project description:Due to its small and sequenced genome, short generation time, efficient transformation and increasing genetic resources, Brachypodium distachyon is an emerging model for grasses. Despite this, data capturing gene expression patterns across different organs and developmental stages is missing. We have generated a comprehensive gene expression atlas for Brachypodium, capturing 9 different organs and developmental stages

2017-06-03 | E-MTAB-5491 | biostudies-arrayexpress

Transcriptional responses to protoplasting in the early leaf developmental zone of Brachypodium distachyon

Project description:We employed bulk RNA-seq to find protoplasting-induced genes in the wild model grass Brachypodium distachyon.

2025-09-23 | GSE306756 | GEO