Zea mays
Ontology highlight
ABSTRACT:
PROVIDER: PRJNA356172 | ENA |
REPOSITORIES: ENA
Dataset's files
| Action | DRS | |||
|---|---|---|---|---|
| SRR5075560.fastq.gz | Fastqsanger.gz | |||
| SRR5075561.fastq.gz | Fastqsanger.gz | |||
| SRR5075552.fastq.gz | Fastqsanger.gz | |||
| SRR5075562.fastq.gz | Fastqsanger.gz | |||
| SRR5075553.fastq.gz | Fastqsanger.gz |
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Project description:RNA-directed DNA methylation (RdDM) in plants is a well-characterized example of RNA interference-related transcriptional gene silencing. To determine the relationships between RdDM and heterochromatin in the repeat-rich maize (Zea mays) genome, we performed whole-genome analyses of several heterochromatic features: dimethylation of lysine 9 and lysine 27 (H3K9me2 and H3K27me2), chromatin accessibility, DNA methylation, and small RNAs; we also analyzed two mutants that affect these processes, mediator of paramutation1 and zea methyltransferase2.
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Project description:These data include RNA-seq, circRNA-seq, and small RNA-seq of transcriptome, Ribo-seq of translatome and protein protein binary interactions by recombination-based library vs. library yeast-2-hybrid throughout the lifecycle of the maize inbred line B73.
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