Manihot esculenta
Ontology highlight
ABSTRACT:
PROVIDER: PRJNA359998 | ENA |
REPOSITORIES: ENA
Dataset's files
| Action | DRS | |||
|---|---|---|---|---|
| SRR5140230.fastq.gz | Fastqsanger.gz | |||
| SRR5140240.fastq.gz | Fastqsanger.gz | |||
| SRR5140231.fastq.gz | Fastqsanger.gz | |||
| SRR5140241.fastq.gz | Fastqsanger.gz | |||
| SRR5140222.fastq.gz | Fastqsanger.gz |
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Project description:Genome-wide methylome study in cassava [methylation]
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Project description:The external application of ethanol has been reported to enhance salinity, drought and heat stress tolerance in various plant species (Nguyen et al. 2017 ; Bashir et al. in prep.; Matsui et al. in prep). However, the effects of ethanol application on increased drought tolerance in cassava, an important tropical starch crop used for food security and industrial application by a billion people world-wide, remain unknown. In the present study, morphological, physiological, and molecular responses to drought were analyzed in cassava after the treatment with ethanol. The present study showed that the ethanol treatment increased drought avoidance in cassava than the water treatment. Ethanol treatment induced stomatal closure, resulting in the increase of leaf temperature. The decrease in water content of the leaves during drought stress treatment was reduced in ethanol-treated plants compared with control plants. Transcriptome analysis revealed that the expression of drought stress response-related genes and ABA response-related genes was lower in ethanol-treated plants compared with control plants on 12 days after drought treatment.
2025-01-26 | GSE195521 | GEO
Project description:External application of acetic acid has been recently reported to enhance the survival to drought in plants such as Arabidopsis, rapeseed, maize, rice and wheat, but the effects of acetic acid application on increased drought tolerance in woody plants such as a tropical crop “cassava” remain elusive. A molecular understanding of acetic acid-induced drought avoidance in cassava will contribute to the development of technology that can be used to enhance drought tolerance without resorting to transgenic technology or advancements in cassava cultivation. In the present study, morphological, physiological and molecular responses to drought were analyzed in cassava after the treatment with acetic acid. Results indicated that the acetic acid-treated cassava plants had a higher level of drought avoidance than water-treated, control plants. Specifically, higher leaf relative water content, and chlorophyll and carotenoid levels were observed as soils dried out during the drought treatment. Leaf temperatures in acetic acid-treated cassava plants were higher relative to leaves on plants pretreated with water and the increase of ABA content was observed in leaves of acetic acid-treated plants, suggesting that stomatal conductance and the transpiration rate in leaves of acetic acid-treated plants decreased to maintain relative water contents and avoid drought. Transcriptome analysis revealed that the acetic acid treatment increased the expression of ABA signaling-related genes, such as OPEN STOMATA 1 (OST1) and protein phosphatase 2C; as well as drought response and tolerance-related genes, such as outer membrane tryptophan-rich sensory protein (TSPO), and heat shock proteins. Collectively, the external application of acetic acid enhances drought avoidance in cassava through the upregulation of ABA signaling pathway genes and several stress response- and tolerance-related genes. These data support the idea that adjustments of the acetic acid application to plants is useful to enhance drought tolerance in order to minimize the growth inhibition in the agricultural field.
2019-05-29 | GSE122140 | GEO
Project description:Full length long read transcript sequences were used as guides along with other multi-omics data to build gene model annotation of Cassava.
2024-05-28 | GSE225361 | GEO
Project description:Phytomonas are a large and diverse sub-group of plant-infecting trypanosomatids that are relatively poorly understood. Little is known of their biology or how they have adapted to life inside plants. This study sequenced the genome of the Cassava (Manihot esculenta) infecting species Phytomonas francai to provide additional genome resources and new insight into the biology of this poorly understood group of organisms.
2016-10-02 | E-MTAB-5110 | biostudies-arrayexpress
Project description:Cassava (Manihot esculenta) is one of the most important staple food crops worldwide. Its starchy tuberous roots supply over 800 million people with carbohydrates. Yet, surprisingly little is known about the processes involved in filling of those vital storage organs. A better understanding of cassava carbohydrate allocation and starch storage is key to improve storage root yield. In this work, we studied cassava morphology and phloem sap flow from source to sink using transgenic pAtSUC2::GFP plants, the phloem tracers esculin and 5(6)-carboxyfluorescein diacetate (CFDA), as well as several staining techniques. We show that cassava performs apoplasmic phloem loading in source leaves and symplasmic unloading into phloem parenchyma cells of tuberous roots. We demonstrate that vascular rays play an important role in radial transport from the phloem to xylem parenchyma cells in tuberous roots. Furthermore, enzymatic and proteomic measurements of storage root tissues confirmed high abundance and activity of enzymes involved in the sucrose synthase-mediated pathway and indicated that starch is stored most efficiently in the outer xylem layers of tuberous roots. Our findings represent a first basis for biotechnological approaches aimed at improved phloem loading and enhanced carbohydrate allocation and storage in order to increase tuberous root yield of cassava.
2019-07-08 | PXD014001 | Pride