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Zea mays

ABSTRACT: Genome-wide identification of H3K9ac enriched regions in inner stem tissue of V2 seedlings and husks (maize B73) [ChIP-Seq]

PROVIDER: PRJNA369206 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR5217070.fastq.gz	Fastqsanger.gz
	SRR5217071.fastq.gz	Fastqsanger.gz
	SRR5217072.fastq.gz	Fastqsanger.gz
	SRR5217073.fastq.gz	Fastqsanger.gz
	SRR5217074.fastq.gz	Fastqsanger.gz

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Zea mays

Project description:Genome-wide gene expression profile in inner stem tissue of V2 seedlings and husks (maize B73) [RNA-Seq]

| PRJNA369205 | ENA

Inner stem tissue of V2 seedlings and husks (maize B73)

Project description:Inner stem tissue of V2 seedlings and husks (maize B73)

| PRJNA369198 | ENA

Zea mays Transcriptome or Gene expression

Project description:In this study a transcriptomic approach (RNA-sequencing) was utilized to elucidate molecular responses of maize (Zea mays L.) primary roots of the inbred line B73 to water deficit to gain a better understanding of the mechanisms underlying drought tolerance. Kernels of the maize inbred line B73 were germinated in paper rolls soaked with distilled water until seedlings had a primary root length of 2 to 4 cm. For mild and severe water deficit conditions, seedlings were transferred to PEG8000 solution with water potentials of -0.2 MPa and -0.8 MPa, respectively. Water deficit treatment was applied for 6 h and 24 h. Each treatment was performed in four biological replicates each consisting of 10 roots.

2014-05-03 | E-MTAB-4325 | biostudies-arrayexpress

RL-SAGE analysis of Zea mays leaf transcriptome

Project description:Using the RL-SAGE method (Gowda et al. 2004), a maize leaf longSAGE library (cv. inbred line B73) was constructed. Leaf tissues were harvested from 4-week old B73 plants for RNA isolation. The conditions in the growth chamber were 12 h light (500 µmol photons m-2 sec-1), 20oC at night, 26oC in the day and 85% relative humidity. A total of 44,870 unique tags (17 bases +CATG) were identified from 232,948 individual tags in the maize leaf library.

2010-12-10 | GSE25994 | GEO

Zea mays B73 seedlings incubated 2 hours in water, primary and seminal root tips (0-1mm), RNA-seq, cellular transcription data

Project description:These maize (Zea mays L.) B73 cellular RNA samples were prepared from seedlings treated in 2 h water and extracted cellular RNA directly from frozen 1-mm root tips. They are parallel experiment to compare to two other types of RNA extracted from isolated nuclei.

2025-06-16 | GSE299561 | GEO

An Interactome Map of Maize (Zea mays L.)

Project description:These data include RNA-seq, circRNA-seq, and small RNA-seq of transcriptome, Ribo-seq of translatome and protein protein binary interactions by recombination-based library vs. library yeast-2-hybrid throughout the lifecycle of the maize inbred line B73.

2022-12-25 | GSE160288 | GEO

Expression analysis of maize (Zea mays L.) genes in continuous light

Project description:Investigation of whole genome gene expression level changes in maize plants (standard maize line B73) in controlled conditions under continuous light. Tissues of the leaf elongation zone were sampled from plants well watered every 12 hours before and after lights on.

2014-03-04 | GSE55524 | GEO

Zea mays Transcriptome or Gene expression

Project description:Sequencing of the maize B73 transcriptome

2012-06-21 | E-MTAB-4296 | biostudies-arrayexpress

A global gene expression analysis in the shoot apical meristem of maize (Zea mays L.)

Project description:All above ground organs of higher plants are ultimately derived from specialized organogenic structures called shoot apical meristems (SAMs). It is comprised of pluripotent stem cells, which divide to regenerate themselves as well as to provide cells to form other organs such as leaves and stems. To study global gene expression in maize SAM and very young primordia (P0 and P1), RNA was extracted from both SAMs (SAMs per se plus P0 and P1) and above-ground portions of seedlings collected from 14-day old B73 seedlings. These RNA samples were labeled and hybridized with cDNA microarrays that have over 37,000 informative spots from maize. Statistical analyses showed that approximately 7.4% and 6.0% of the tested genes were significantly (p <0.0001) up- and down-regulated, respectively. Several control genes, whose expressions were confirmed in the maize SAM in the previous studies, were also up-regulated (p <0.01). The significantly up-regulated genes involved many novel transcription factor genes and regulatory genes as well as some kinds of enzymes, suggesting these genes play important roles in meristem maintenance and the early stage of leaf development in maize. Interestingly, several retrotransposon-related genes were greatly up-regulated in the SAM. This finding raised the possibility that retrotransposons are involved in regulatory mechanisms of maize SAM. Keywords: cell type comparison design

2007-06-07 | GSE6267 | GEO

Genome-wide analysis of alternative splicing in Zea mays: landscape and genetic regulation

Project description:Analysis of the maize alternative splicing landscape, including transcript discovery and mapping of genotype-dependent variations in alternative splicing using B73, Mo17 and the SX19 inbred mapping population

2014-10-29 | GSE57337 | GEO

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