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Mus musculus

ABSTRACT: Capturing the onset of PRC2-mediated repressive domain formation (RNA-Seq)

PROVIDER: PRJNA369677 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR5224460.fastq.gz	Fastqsanger.gz
	SRR5224470.fastq.gz	Fastqsanger.gz
	SRR5224461.fastq.gz	Fastqsanger.gz
	SRR5224462.fastq.gz	Fastqsanger.gz
	SRR5224463.fastq.gz	Fastqsanger.gz

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Project description:Capturing the onset of PRC2-mediated repressive domain formation (ChIP-Seq)

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Capturing the onset of PRC2-mediated repressive domain formation

Project description:Capturing the onset of PRC2-mediated repressive domain formation

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Bidirectional Introgression between Mus musculus domesticus and Mus spretus.

Project description:Introgressed variants from other species can be an important source of genetic variation because they may arise rapidly, can include multiple mutations on a single haplotype, and have often been pretested by selection in the species of origin. Although introgressed alleles are generally deleterious, several studies have reported introgression as the source of adaptive alleles-including the rodenticide-resistant variant of Vkorc1 that introgressed from Mus spretus into European populations of Mus musculus domesticus. Here, we conducted bidirectional genome scans to characterize introgressed regions into one wild population of M. spretus from Spain and three wild populations of M. m. domesticus from France, Germany, and Iran. Despite the fact that these species show considerable intrinsic postzygotic reproductive isolation, introgression was observed in all individuals, including in the M. musculus reference genome (GRCm38). Mus spretus individuals had a greater proportion of introgression compared with M. m. domesticus, and within M. m. domesticus, the proportion of introgression decreased with geographic distance from the area of sympatry. Introgression was observed on all autosomes for both species, but not on the X-chromosome in M. m. domesticus, consistent with known X-linked hybrid sterility and inviability genes that have been mapped to the M. spretus X-chromosome. Tract lengths were generally short with a few outliers of up to 2.7 Mb. Interestingly, the longest introgressed tracts were in olfactory receptor regions, and introgressed tracts were significantly enriched for olfactory receptor genes in both species, suggesting that introgression may be a source of functional novelty even between species with high barriers to gene flow.

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Capturing the onset of PRC2-mediated repressive domain formation (RNA-Seq)

Project description:Our study defines nucleation and spreading regions for Polycomb repressive complex 2 (PRC2), demonstrating the principle of PRC2 domain formation in mammals. We elucidate the role of genome architecture in formation of these domains and identify JARID2 and MTF2 as being crucial for full recruitment of PRC2 to chromatin.

2018-06-21 | GSE94430 | GEO

Capturing the onset of PRC2-mediated repressive domain formation (ChIP-Seq)

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Capturing the onset of PRC2-mediated repressive domain formation [ChIP-Seq, 2]

2018-06-21 | GSE103258 | GEO