Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Malus domestica cultivar:Granny Smith

ABSTRACT: Malus domestica Transcriptome

PROVIDER: PRJNA376188 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR5279480.fastq.gz	Fastqsanger.gz
	SRR5279490.fastq.gz	Fastqsanger.gz
	SRR5279500.fastq.gz	Fastqsanger.gz
	SRR5279510.fastq.gz	Fastqsanger.gz
	SRR5279520.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 64

Similar Datasets

Malus domestica cultivar:Granny smith

Project description:Malus domestica cultivar:Granny smith Genome sequencing

| PRJNA1168439 | ENA

Malus domestica cultivar:Granny Smith

Project description:Malus domestica cultivar:Granny Smith Raw sequence reads

| PRJNA803936 | ENA

Transcriptional profiling of Granny Smith apple peel (Malus x domestica Borkh) at harvest between contrasted years for scald incidence

Project description:Granny Smith apples (Malus x domestica Borkh) were harvested at early physiological mature stage in 2014, 2015 and 2017 and phenotyped for scald incidence after long time cold storage. Differential analyses were set-up for peel samples collected at harvest between fruit batches with low or high scald incidence.

2020-04-20 | GSE135863 | GEO

Malus domestica breed:Granny smith

Project description:Malus domestica breed:Granny smith Genome sequencing

| PRJNA1168436 | ENA

Effect of 1-MCP and ozone post-harvest treatments on the transcriptional profiling of Granny Smith apple peel (Malus x domestica Borkh) after cold storage.

Project description:Granny Smith apples (Malus x domestica Borkh) grown in commercial orchards were harvested at physiological mature stage and maintained 6 months in cold storage with or without 1-MCP post-harvest treatment, and with or without enriched ozone atmosphere.

2020-03-09 | GSE133456 | GEO

Malus x domestica chloroplast LC-MS/MS

Project description:Characterization of Malus x domestica chloroplast proteome

2022-03-01 | PXD009527 | Pride

Malus domestica cultivar:Granny Smith and Honey crsip

Project description:Malus domestica cultivar:Granny Smith and Honey crsip Transcriptome or Gene expression

| PRJNA475898 | ENA

Transcriptomic characterization of Malus domestica response to Fe and P deficiency

Project description:Transcriptomic characterization of Malus domestica response to iron and phosphorus deficiency.

2019-05-01 | GSE122554 | GEO

Malus domestica isolate:GS-4 | cultivar:Granny Smith

Project description:Malus domestica isolate:GS-4 | cultivar:Granny Smith Genome sequencing and assembly

| PRJNA927238 | ENA

Malus domestica cultivar: McIntosh and Husveti rozmaring

Project description:Genome-wide DNA methylation analysis between long-term in vitro shoot culture and acclimatized apple plants DNA methylation is a process of epigenetic modification that can alter the functionality of a genome. Using whole-genome bisulfite sequencing, this study quantify the level of DNA methylation in the epigenomes of two diploid apple (Malus x domestica) scion cultivars ('McIntosh' and 'Húsvéti rozmaring') derived from three environmental conditions: in vivo mother plants in an orchard, in vitro culture, and acclimatized in vitro plants. The global DNA methylation levels were not dependent on the source of plant material. Significant differences in DNA methylation were identified in 586 out of 45,116 genes, including promoter and coding sequences, and classified as differentially methylated genes (DMGs). Differential methylation was visualised by an MA plot and functional genomic maps were established for biological processes, molecular functions and cellular components. Considering the DMGs, in vitro tissue culture resulted in the highest level of methylation, which decreased after acclimatization and tended to be similar to that in the mother tree. Methylation patterns of the two scions differed, indicating cultivar-specific epigenetic regulation of gene expression during adaptation to various environments. After selecting genes that displayed differences larger than ±10% in CpG and CHG contexts, or larger than ±1.35% in the CHH context from among the DMGs, they were annotated in Blast2GO v5.1.12 for Gene Ontology. These DNA methylation results suggest that epigenetic changes may contribute to the adaptation of apple to environmental changes by modifying gene expression.

2019-07-25 | GSE116995 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data