Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Transcriptome analysis of BAP1 knockout and restoration

ABSTRACT: Transcriptome analysis of BAP1 knockout and restoration

PROVIDER: PRJNA381014 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR5395990.fastq.gz	Fastqsanger.gz
	SRR5398130.fastq.gz	Fastqsanger.gz
	SRR5395991.fastq.gz	Fastqsanger.gz
	SRR5398121.fastq.gz	Fastqsanger.gz
	SRR5398131.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 23

Similar Datasets

Expression profiles of restoration of BAP1 in a BAP1 deficient cell line

Project description:RNA-seq of UPMM3 with restoration of BAP1 and BAP1 mutant proteins. Cell line UPMM3 contains a frameshift mutation in BAP1.

2018-01-31 | GSE97224 | GEO

Transcriptome analysis of BAP1 knockout and restoration

Project description:This SuperSeries is composed of the SubSeries listed below.

2018-01-31 | GSE97225 | GEO

H2AK119ub1 and H3K27me3 ChIP-seq in conditional knockout of Bap1

Project description:ChIP-seq of H2AK119ub1 and H3K27me3 in a conditional knockout of Bap1

2023-01-01 | GSE211544 | GEO

RNA-seq analysis of peripheral nerve with conditional knockout of Bap1 deubiquitinase.

Project description:The goal of the experiment was to determine the role of H2A deubiquitinase in the nerve injury response in peripheral nerve. A Schwann cell specific knockout of the H2A deubiquitinase (Bap1) was generated to compare with wild type mice.

2022-05-02 | GSE197149 | GEO

Global expression analysis of BAP1 knockdown in transfected 92.1 cells

Project description:Analysis of the effect that reduced BAP1 levels have on global gene expression.The hypothesis tested was that reduction in BAP1 levels would produce changes in gene expression similar to changes observed in class 2 uveal melanomas. Data provided insight into genes that are disrupted with reduced BAP1 levels. Total RNA was isolated from 92.1 cells transfected with either control or BAP1 knockdown constructs for global expression analysis.

2011-01-06 | E-GEOD-24896 | biostudies-arrayexpress

RNA-seq analysis of peripheral nerve with conditional knockout of Bap1 deubiquitinase.

Project description:RNA-seq analysis of peripheral nerve with conditional knockout of Bap1 deubiquitinase.

| PRJNA809207 | ENA

Transcriptome profiles of hematopoietic lineages from BAP1 WT and KO mice

Project description:BAP1 has been studied as a tumor suppressor. Our aim was to characterize genes that were altered in various hematopoietic cell types upon deletion of BAP1. BAP1 WT versus KO cells.

2012-11-07 | E-GEOD-40541 | biostudies-arrayexpress

ATAC-Seq analysis of MC38 colon carcinoma cells and MC38 Bap1-knockout cells

Project description:ATAC-Seq analysis of MC38 colon carcinoma cells and MC38 Bap1-knockout cells

| PRJEB64236 | ENA

Expression data from BAP1 depleted cells

Project description:The deubiquitinase BAP1 is a candidate tumor suppressor regulating cell proliferation in human and is required for development in Drosophila. BAP1 is assembled into high molecular weight transcriptional multi-protein complexes. In order to identify potential BAP1 target genes, global mRNA expression profiling using microarrays was conducted. U2OS cells, transfected with a non-target control shRNA or shRNAs targeting BAP1, were selected with puromycin containing medium and then synchronized at the G1/S border to allow comparative analysis of gene expression.

2010-11-05 | E-GEOD-23035 | biostudies-arrayexpress

Global expression analysis of BAP1 knockdown in transfected 92.1 cells

2011-01-06 | GSE24896 | GEO