Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Invasive Group A Streptococcus Southwestern U.S.

PROVIDER: PRJNA412639 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR6121710_1.fastq.gz	Fastqsanger.gz
	SRR6121710_2.fastq.gz	Fastqsanger.gz
	SRR6121720_1.fastq.gz	Fastqsanger.gz
	SRR6121720_2.fastq.gz	Fastqsanger.gz
	SRR6121711_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 36

Similar Datasets

Project description:Adult invasive Group B Streptococcus

| PRJNA662030 | ENA

Project description:RNAseq of invasive group A Streptococcus

| PRJNA1182229 | ENA

Project description:Invasive Group B Streptococcus from Denmark, 2024

| PRJEB88735 | ENA

Spatial Transcriptomics of Lungs Infected with Coccidioides posadasii

Project description:Coccidioidomycosis, or Valley Fever, is a lung disease caused by inhaling Coccidioides fungi, prevalent in the Southwestern U.S., Mexico, and parts of Central and South America. Climate change is contributing to the spread of this disease. Many cases are asymptomatic, some are often misdiagnosed, and a small subset can progress to severe illness. To better understand lung responses during late Coccidioides infection, we used 10x Visium spatial transcriptomics. We analyzed non-infected lung (D0) and infected lung at 14 days post-infection (D14).

2024-11-13 | GSE274767 | GEO

scRNA-seq time-course of Coccidioides posadasii infected lungs

Project description:Coccidioidomycosis, or Valley Fever, is a lung disease caused by inhaling Coccidioides fungi, prevalent in the Southwestern U.S., Mexico, and parts of Central and South America. Climate change is contributing to the spread of this disease. Many cases are asymptomatic, some are often misdiagnosed, and a small subset can progress to severe illness. To better understand lung responses during Coccidioides infection, we used single-cell RNA sequencing (scRNA-seq). We analyzed non-infected lungs (D0) and infected lungs at 5, 9, and 14 days post-infection (D5, D9, D14).

2024-11-13 | GSE274766 | GEO

Transcriptional Responses to Elevated Temperature in Streptococcus agalactiae

Project description:In the transition from recto-vaginal colonizing organism to invasive pathogen, Streptococcus agalactiae (Group B Streptococcus, GBS) must adapt to changes in host temperature, including elevated temperatures due to host fever. To identify genes important to the survival of GBS in response to heat stress, transcriptional profiling was performed using DNA microarray analysis, comparing GBS grown at normal temperature (37˚C) to GBS exposed to elevated temperature (42˚C).

2012-11-18 | GSE14573 | GEO

Project description:Invasive Group A Streptococcus infections (Streptococcus pyogenes) in Iceland, 2022-2023

| PRJEB62874 | ENA

Project description:Whole-genome sequencing of invasive and non-invasive Group A Streptococcus (GAS)

| PRJNA996294 | ENA

Project description:Invasive Group B Streptococcus from Faroe Islands, 2020 - 2024

| PRJEB89722 | ENA

RNA-seq to investigate differential expression of serotype emm1 Streptococcus pyogenes strains S119 and S126

Project description:The human pathogen Streptococcus pyogenes, or group A streptococcus, is responsible for mild infections to life-threatening diseases. We previously have performed the transcription start site profiling of a Streptococcus pyogenes emm1 strain, strain S119, an invasive strain isolated from a blood culture. Here, we perform strand-specific RNA-seq experiments to complete this characterization and analyze the global coverage and the differential expression in growth medium complemented or not with 15 mM MgCl2. In addition we compare these results to those obtained with a related strain, strain S126, corresponding to a colonization sample, that differs from S119 by only one mutation in the two-component regulator of virulence CovRS.

2018-11-30 | E-MTAB-7101 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data