Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Populus deltoides x Populus simonii

ABSTRACT: Resequencing of additional five progeny in an F1 hybrid of Populus deltoides and P. simonii (II)

PROVIDER: PRJNA417993 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR6307312_1.fastq.gz	Fastqsanger.gz
	SRR6307312_2.fastq.gz	Fastqsanger.gz
	SRR6307313_1.fastq.gz	Fastqsanger.gz
	SRR6307313_2.fastq.gz	Fastqsanger.gz
	SRR6307314_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 10

Similar Datasets

Populus deltoides x Populus simonii

Project description:Resequencing of five progeny in an F1 hybrid of Populus deltoides and P. simonii (I)

| PRJNA417980 | ENA

Populus deltoides x Populus simonii

Project description:Populus deltoides x Populus simonii overview

| PRJNA508248 | ENA

Populus deltoides x Populus simonii

Project description:Populus deltoides x Populus simonii Raw sequence reads

| PRJNA578229 | ENA

Screen of oligonucleotides for microarray transcriptome analysis of Populus deltoides and P. trichocarpa

Project description:The purpose of this study was to evaluate a set of 6-7 long oligonucleotide probes developed based on the sequence of the Populus trichocarpa genome, that are optimal for gene expression analysis of P. deltoides and a hybrid of P. deltoides and P. trichocarpa. To evaluate these probes, multiple tissues (differentiating xyle, leaf and whole-root) of a pure P. deltoides and a hybrid (P. deltoides X P. trichocarpa) were transcript profiled for identification of one or more probes that are not biased towards one or the other genotype.

2008-09-10 | GSE12492 | GEO

Populus deltoides x Populus simonii

Project description:Populus deltoides x Populus simonii Transcriptome or Gene expression

| PRJNA578187 | ENA

Populus deltoides x Populus simonii

Project description:Populus deltoides x Populus simonii Transcriptome or Gene expression

| PRJNA578189 | ENA

Ozone exposure of Populus deltoides and Populus trichocarpa

Project description:Populus deltoides and Populus trichocarpa were exposed to either ambient air or an acute ozone exposure of 200 ppb for 9 hrs and ozone response was profiled for each genotype by hybridising control against ozone-exposed samples per genotype. Keywords: stress response, genotype comparrison, ozone exposure

2009-04-01 | GSE10874 | GEO

Gene expression and intragenic polymorphism in a Populus trichocarpa and Populus deltoides pseudo-backcross pedigree

Project description:A microarray analysis of whole-genome gene expression and single feature polymorphism in a (Populus trichocarpa X Populus deltoides) X Populus deltoides pseudo-backcross pedigree. Genetic variation in gene expression was quantified for 55,793 predicted gene models based on a single probe per gene. Concurrently, sequence-level polymorphism was analyzed based on dedicated probes identified in a pilot study comprised of the two parent genotypes (GPL7169). Resultant data contributed to a high density genetic map and to analysis of the genetic architecture of gene expression in Populus. Keywords: Genetic analysis of gene expression and polymorphism, eQTL Data include one biological replicate of 178 segregating pseudobackcross progeny analyzed for gene expression (GE) using one probe per gene for 55793 independent gene models (probes E_POPLARSxxxxxPxxxxx) and single feature sequence polymorphism (SFP) using one probe per gene for 12084 independent gene models (probes G_POPLARSxxxxxPxxxxx). GE and SFP probes were selected from 6-7 probes per gene previously tested in a pilot study of the two parent trees of the cross (Populus deltoides X Populus trichocarpa).

2008-09-06 | E-GEOD-12623 | biostudies-arrayexpress

Gene expression in leaves of a Populus trichocarpa and Populus deltoides pseudo-backcross population

Project description:A microarray analysis of whole-genome gene expression in leaves was carried out in a (Populus trichocarpa X Populus deltoides) X Populus deltoides pseudo-backcross pedigree. Genetic variation in gene expression was quantified for 55,793 predicted gene models based on a single probe per gene. Resultant data contributed to the analysis of the genetic architecture of gene expression in leaves of Populus.

2010-02-02 | GSE20117 | GEO

Expression data from one-year-old leaves of Populus simonii by high-temperature treatments

Project description:We take one-year-old plants for high-temperature treatments and controls. We used the Affymetrix Poplar GeneChip to decrypt the gene functions and mechanisms in Populus simonii leaves.

2013-10-12 | GSE41557 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data