Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Gene chip analysis of NPCs with and without cocultured with ASCs

ABSTRACT: Gene chip analysis of NPCs with and without cocultured with ASCs

PROVIDER: PRJNA445282 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Similar Datasets

Gene chip analysis of ASCs with and without cocultured with NPCs

Project description:Gene chip analysis of ASCs with and without cocultured with NPCs

| PRJNA487348 | ENA

Gene chip analysis of NPCs with and without cocultured with ASCs

Project description:We used microarrays to detail the global programme of gene expression underlying the coculturing of degenerate NPCs and ASCs and identified distinct classes of altered genes and ncRNAs during this process.

2018-03-23 | GSE112216 | GEO

Gene chip analysis of ASCs with and without cocultured with NPCs

Project description:We used microarrays to detail the global programme of gene expression underlying the coculturing of ASCs and degenerative NPCs and identified distinct classes of altered genes and ncRNAs during this process.

2019-08-31 | GSE118927 | GEO

CHIP

Project description:Arabidopsis thaliana CHIP, CHIP [Source:UniProtKB/TrEMBL;Acc:A0A178VGJ7], is differentially expressed in 100 experiment(s);

| AT3G07370 | ExpressionAtlas

CHIP

Project description:Arabidopsis thaliana CHIP, CHIP [Source:UniProtKB/TrEMBL;Acc:A0A178VGJ7], is expressed in 13 baseline experiment(s);

| AT3G07370 | ExpressionAtlas

Epigenomic Profiling of H3K4me2 and H3K4me3 in Patient-Derived NPCs to Study L2HGDH Deficiency

Project description:Chromatin immunoprecipitation followed by sequencing (ChIP-seq) was performed to investigate the epigenetic landscape in neural progenitor cells (NPCs) derived from L2HGA patient iPSCs with or without correction of the pathogenic L2HGDH variant. We profiled histone modifications H3K4me2 and H3K4me3 as well as input control across four conditions: unedited Patient 1 NPCs, corrected Patient 1 NPCs, corrected NPCs treated with DMSO, and corrected NPCs treated with the KDM5 inhibitor C70. This dataset provides insight into enhancer and promoter activity at the MYC locus and genome-wide effects of L-2HG-associated epigenetic dysregulation.

2025-04-23 | GSE295011 | GEO

ChIP-Seq of Sox2 and Brn2 in ESCs, NPCs, and differentiating ESCs

Project description:We analyzed the genome-wide binding of Sox2 and POU factor partner factors, Oct4 in ESCs (using published datasets PMID:18692474 and GSM307137, GSM307154, GSM307155) and Brn2 in NPCs. We found that Sox2 and Oct4 co-occupied a large subset of promoters and enhancers in ESCs, but that Sox2 and Brn2 co-occupy predominantly enhancers. Further, we overexpressed Brn2 in differentiating ESCs and showed that ectopic Brn2 recruited Sox2 to NPC-specific targets, resulting in skewed differentiation towards the neural lineage. Examination of transcription factor binding in ESCs, NPCs, and differentiating ESCs by ChIP-Seq.

2013-02-20 | E-GEOD-35496 | biostudies-arrayexpress

Comparison of WAT EPCs vs WAT ASCs

Project description:Human adipose tissue contains two populations of progenitors (EPCs and ASCs) with cooperative roles in breast cancer. EPCs (CD45-CD34+CD31+CD13-CCRL2+) can generate endothelial cells. ASCs (CD45-CD34+CD31-CD13+CD140b+) are mesenchymal progenitors which generated pericytes. CD13+ cells and CD13- cells from 7 Lipotransfer aspirate

2013-07-05 | E-GEOD-44302 | biostudies-arrayexpress

RNA-seq data of adipocytes co-cocultured with OVCAR5 in Boyden chamber (4d)

Project description:We indirectly cocultured OVCAR5-RFP cells using a 0.45 micron Boyden chamber with or without adipocytes for 4 days, collected the RNA from adipocytes, and performed RNA-seq

2018-03-08 | GSE111538 | GEO

Comparison of WAT EPCs vs WAT ASCs

2013-07-05 | GSE44302 | GEO