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Gene expression profiling shows that a jaz decuple mutation (jazD) promotes expression of defense-related genes while inhibiting expression of growth-related genes

ABSTRACT: Gene expression profiling shows that a jaz decuple mutation (jazD) promotes expression of defense-related genes while inhibiting expression of growth-related genes

PROVIDER: PRJNA479861 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR7474130.fastq.gz	Fastqsanger.gz
	SRR7474131.fastq.gz	Fastqsanger.gz
	SRR7474123.fastq.gz	Fastqsanger.gz
	SRR7474124.fastq.gz	Fastqsanger.gz
	SRR7474125.fastq.gz	Fastqsanger.gz

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Gene expression profiling shows that a jaz decuple mutation (jazD) promotes expression of defense-related genes while inhibiting expression of growth-related genes

Project description:The decuple jaz mutation (jazD) affects plant growth and defense. We used RNA-sequencing to query the transcriptomes of a jaz quintuple mutant (jazQ) and jazD, and examined how these mutations alter the expression of growth- and defense-associated genes in comparison to wild-type Col-0 plants. The data highlight how jasmonate pathways contribute to growth and defense.

2018-11-20 | GSE116681 | GEO

Gene expression profiling shows that CYCLIN-DEPENDENT KINASE 8 (CDK8) promotes the expression of defense-related genes in a higher-order jaz (jazD) mutant

Project description:The decuple jaz mutation (jazD) promotes defense responses while inhibiting growth. We used RNA-sequencing to query the the transcriptomes of wild-type Col-0, cdk8-1, jazD and jazD cdk8-1 plants. The data highlight how CDK8 contributes to the expression of growth- and defense-related genes in jazD.

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Gene expression profiling shows that CYCLIN-DEPENDENT KINASE 8 (CDK8) promotes the expression of defense-related genes in a higher-order jaz (jazD) mutant

Project description:Gene expression profiling shows that CYCLIN-DEPENDENT KINASE 8 (CDK8) promotes the expression of defense-related genes in a higher-order jaz (jazD) mutant

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Gene expression profiling shows that combination of jazQ and phyB-9 mutations promotes additive and enhanced expression of growth- and defense-related genes

Project description:The quintuple jaz mutant jazQ and the phytochrome mutant phyB-9 affect plant growth and defense. We used RNA-sequencing to query the transcriptomes of jazQ and phyB-9, as well as the combined jazQ phyB-9 sextuple mutatant, and examined how these mutations alter the expression of growth- and defense-associated genes. The data highlight how jasmonate and light signaling pathways contribute to growth and defense, and how their removal genetically promotes additive responses.

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A single JAZ repressor controls the jasmonate pathway in Marchantia polymorpha

Project description:JAZ genes are negative regulators of jasmonate responses with a dual function as repressors of transcription factors and co-receptors, together with COI1, of the hormone jasmonoyl-isoleucine (JA-Ile). This family has been mainly studied in angiosperms, where high gene redundancy hinders the characterization of a complete depletion of JAZ function. Moreover, the recent discovery that JA-Ile is not the sole COI1/JAZ ligand in land plants, as dn-OPDA is the bioactive ligand in Marchantia polymorpha, underscores the importance of studying JAZ co-receptors in bryophytes. Here we exploited the low gene redundancy of the liverwort Marchantia polymorpha to characterize the function of the single MpJAZ in this early-divergent plant lineage. We demonstrate that MpJAZ is the ortholog of AtJAZ and acts as a repressor of dinor-OPDA responses in Marchantia. Mpjaz mutants show a dwarf phenotype and severe developmental defects related to growth inhibition, consistent with a constitutive activation of the dinor-OPDA pathway and the overaccumulation of both dinor-OPDA and its precursor OPDA. The expression of AtJAZ3 in Mpjaz complements MpJAZ repressor function, indicating that JAZ function is conserved across land plants. However, AtJAZ3 is unable to form co-receptor complexes with MpCOI1 and dn-OPDA, which evidences that the Jas domain, and not only COI1, determines ligand specificity.

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NFKB2 Knockdown Reduces Expression of HR-Related Genes

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Identification of AIA_H related genes and BHGZD therapeutic effect related genes.

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Arabidopsis ECAP is a New Adaptor Protein that Connects JAZ Repressors with TPR2 Co-repressor to Suppress Jasmonate-Responsive Anthocyanin Accumulation

Project description:Suppression mechanism employed by transcriptional repressors is commonly existed in diverse phytohormone signaling. In Arabidopsis thaliana, JASMONATE-ZIM DOMAIN (JAZ) proteins act as transcriptional repressors and involve in different aspects of the JA signaling network, through recruiting general co-repressors TOPLESS (TPL) and TPL-related proteins (TPRs). To accomplish overlapping but also finely separated functions of JAZ proteins, specificadaptor proteins are employed in JA signaling. Novel Interactor of JAZ (NINJA) is an adaptor protein mediates gene repression in JA-dependent root growth inhibition and pathogen defense. However, the adaptor protein(s) modulate other JA responsive biological processes is still a mystery. In this study, we demonstrated that a previously uncharacterized protein, ECAP(EAR-Containing Adaptor Protein) that connects JAZ6/8 and TPR to repress JA-mediated anthocyanin accumulation at low JA level. We also found ECAP-mediated transcriptional repression might play a general role in multiple aspects of plant development and responses to environments.

2019-11-07 | GSE125557 | GEO